{
  "abstract": "Neonatal sepsis is a leading cause of childhood mortality. Understanding immune cell development can inform strategies to combat this. MR1-restricted T (MR1T) cells can be defined by their recognition of small molecules derived from microbes, self, and drug and drug-like molecules, presented by the MHC class 1-related molecule (MR1). In healthy adults, the majority of MR1T cells express an invariant α-chain; TRAV1-2/TRAJ33/12/20 and are referred to as mucosal-associated invariant T (MAIT) cells. Neonatal MR1T cells isolated from cord blood (CB) demonstrate more diversity in MR1T TCR usage, with the majority of MR1-5-OP-RU-tetramer(+) cells being TRAV1-2(-). To better understand this diversity, we performed single-cell-RNA-seq/TCR-seq (scRNA-seq/scTCR-seq) on MR1-5-OP-RU-tetramer(+) cells from CB (n=5) and adult participants (n=5). CB-derived MR1T cells demonstrate a less cytotoxic/pro-inflammatory phenotype, and a more diverse TCR repertoire. A panel of CB and adult MAIT and TRAV1-2(-) MR1T cell clones were generated, and CB-derived clones were unable to recognize several common riboflavin-producing childhood pathogens (S. aureus, S. pneumoniae, M. tuberculosis). Biochemical and structural investigation of one CB MAIT TCR (CB964 A2; TRAV1-2/TRBV6-2) showed a reduction in binding affinity toward the canonical MR1-antigen, 5-OP-RU, compared to adult MAIT TCRs that correlated with differences in β-chain contribution in the TCR-MR1 interface. Overall, this data shows that CB MAIT and TRAV1-2(-) MR1T cells, express a diverse TCR repertoire, a more restricted childhood pathogen recognition profile and diminished cytotoxic and pro-inflammatory capacity. Understanding this diversity, along with the functional ability of TRAV1-2(-) MR1T cells, could provide insight into increased neonatal susceptibility to infections.",
  "abstract_shown": true,
  "affiliations": [
    "Division of Infectious Diseases, Department of Medicine, University of Toronto, Toronto, ON, Canada",
    "Division of Infectious Diseases, Department of Pediatrics, Oregon Health & Science University, Portland, OR, USA",
    "Division of Pulmonary, Allergy and Critical Care Medicine, Department of Medicine, Oregon Health & Science University, Portland, OR, USA",
    "Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia",
    "Oregon National Primate Research Center, OHSU, Beaverton, OR, USA",
    "Division of Infectious Diseases, Department of Pediatrics, Oregon Health & Science University, Portland, OR, USA. lewinsde@ohsu.edu",
    "Institute of Infection and Immunity, Cardiff University, School of Medicine, Heath Park, Cardiff, UK",
    "Vaccine and Gene Therapy Institute, OHSU, Beaverton, OR, USA"
  ],
  "article_type": null,
  "arxiv": null,
  "author_total": 14,
  "authors": [
    {
      "affs": [
        0,
        1,
        2
      ],
      "name": "Dylan C. Kain",
      "orcid": "0000-0001-5890-2742"
    },
    {
      "affs": [
        3
      ],
      "name": "Wael Awad",
      "orcid": "0000-0002-7597-2133"
    },
    {
      "affs": [
        4
      ],
      "name": "GW McElfresh",
      "orcid": "0000-0002-1948-7571"
    },
    {
      "affs": [
        1
      ],
      "name": "Meghan E. Cansler"
    },
    {
      "affs": [
        1
      ],
      "name": "Gwendolyn M. Swarbrick",
      "orcid": "0000-0001-5786-1256"
    },
    {
      "affs": [
        3
      ],
      "name": "Kean Chan Yew Poa",
      "orcid": "0000-0003-4090-9561"
    },
    {
      "affs": [
        3
      ],
      "name": "Conor McNeice"
    },
    {
      "affs": [
        4
      ],
      "name": "Gregory J. Boggy",
      "orcid": "0000-0002-8283-5620"
    },
    {
      "affs": [
        1
      ],
      "name": "Katherine H. Rott",
      "orcid": "0000-0001-5349-2473"
    },
    {
      "affs": [
        1
      ],
      "name": "Megan D. Null",
      "orcid": "0009-0001-9584-4606"
    },
    {
      "affs": [
        5,
        2
      ],
      "name": "David Michael Lewinsohn",
      "orcid": "0000-0001-9906-9494"
    },
    {
      "affs": [
        3,
        6
      ],
      "name": "Jamie Rossjohn",
      "orcid": "0000-0002-2020-7522"
    },
    {
      "affs": [
        4,
        7
      ],
      "name": "Benjamin N. Bimber",
      "orcid": "0000-0001-8092-3080"
    },
    {
      "affs": [
        5,
        2
      ],
      "name": "Deborah A. Lewinsohn",
      "orcid": "0000-0003-1349-3775"
    }
  ],
  "bibtex": "https://research.draconitic.com/paper/06qxvsn7krz2s.bib",
  "cited_by": 6,
  "doi": "10.1038/s41467-026-74998-7",
  "fulltext_url": null,
  "id": "06qxvsn7krz2s",
  "issns": [
    "2041-1723"
  ],
  "landing_url": "https://doi.org/10.1038/s41467-026-74998-7",
  "language": "en",
  "licence": "CC-BY",
  "licence_label": "CC BY",
  "licence_source": "journal",
  "licence_url": "https://creativecommons.org/licenses/by/4.0/",
  "metadata_licence": null,
  "native_subjects": [
    [
      "openalex",
      "2403|T-cell and B-cell Immunology"
    ]
  ],
  "openalex": "W7166567239",
  "pdf_url": null,
  "pmcid": "PMC11956999",
  "pmid": "40166301",
  "published": "2026-06-29",
  "publisher": "Nature Portfolio",
  "ris": "https://research.draconitic.com/paper/06qxvsn7krz2s.ris",
  "sources": [
    {
      "first_seen": "2026-11-04T13:21:10Z",
      "native_id": "W7166567239",
      "source": "openalex",
      "url": "https://doi.org/10.1038/s41467-026-74998-7"
    }
  ],
  "subjects": [
    {
      "field": "biology",
      "origin": "openalex:2403|T-cell and B-cell Immunology",
      "subfield": "immunology"
    }
  ],
  "title": "Human neonatal MR1T cells have more diverse TCR repertoires but reduced bacterial recognition than adult MR1T cells",
  "title_text": "Human neonatal MR1T cells have more diverse TCR repertoires but reduced bacterial recognition than adult MR1T cells",
  "type": "peer-reviewed",
  "updated_at": "2026-11-07T13:20:53Z",
  "url": "https://research.draconitic.com/paper/06qxvsn7krz2s",
  "venue": "Nature Communications",
  "versions": []
}