{
  "abstract": "Voyager is a novel algorithm that complements real-time sequencing by rapidly mapping long sequencing reads with insertion and deletion errors to a known database of organisms. It utilizes Sorted Motif Distance Space, distances between exact matches of short motifs sorted by rank, to represent sequence similarity in a highly compressed, computationally efficient manner while enabling strain-level discrimination. Voyager incorporates a deconvolution algorithm to discern closely related genomes. It achieves an average species-level accuracy of 99% across 15 datasets, outperforming all evaluated methods. Voyager maintains CPU runtimes comparable to the current fastest methods while using less than half the memory.",
  "abstract_shown": true,
  "affiliations": [
    "Department of Biotechnology, University of Inland Norway, Holsetgata 22, Hamar, 2317, Norway.",
    "Department of Biotechnology, University of Inland Norway, Holsetgata 22, Hamar, 2317, Norway. rafi.ahmad@inn.no.",
    "Institute of Clinical Medicine, Faculty of Health Sciences, UiT - The Arctic University of Norway, Hansine Hansens veg 18, Tromsø, 9019, Norway. rafi.ahmad@inn.no."
  ],
  "article_type": "research article",
  "arxiv": null,
  "author_total": 3,
  "authors": [
    {
      "affs": [
        0
      ],
      "name": "Sverre Branders"
    },
    {
      "affs": [
        0
      ],
      "name": "Manfred G Grabherr"
    },
    {
      "affs": [
        1,
        2
      ],
      "name": "Rafi Ahmad",
      "orcid": "0000-0002-0383-7848"
    }
  ],
  "bibtex": "https://research.draconitic.com/paper/3g12vd70d4rr2.bib",
  "cited_by": 1,
  "doi": "10.1186/s13059-026-04235-3",
  "fulltext_url": "https://europepmc.org/articles/PMC13726117",
  "id": "3g12vd70d4rr2",
  "issns": [
    "1474-7596",
    "1474-760X"
  ],
  "landing_url": "https://europepmc.org/article/MED/42972434",
  "language": "eng",
  "licence": "CC-BY",
  "licence_label": "CC BY",
  "licence_source": "article",
  "licence_url": "https://creativecommons.org/licenses/by/4.0/",
  "metadata_licence": null,
  "native_subjects": [
    [
      "heading",
      "Software"
    ],
    [
      "openalex",
      "1312|Genomics and Phylogenetic Studies"
    ]
  ],
  "openalex": "W7172483147",
  "pdf_url": "https://europepmc.org/articles/PMC13726117?pdf=render",
  "pmcid": "PMC13726117",
  "pmid": "42972434",
  "published": "2026-08-05",
  "publisher": "BMC",
  "ris": "https://research.draconitic.com/paper/3g12vd70d4rr2.ris",
  "sources": [
    {
      "first_seen": "2026-11-04T15:20:45Z",
      "native_id": "MED:42972434",
      "source": "europepmc",
      "url": "https://europepmc.org/article/MED/42972434"
    },
    {
      "first_seen": "2026-11-05T12:22:31Z",
      "native_id": "PMC13726117",
      "source": "pmc",
      "url": "https://doi.org/10.1186/s13059-026-04235-3"
    }
  ],
  "subjects": [
    {
      "field": "biochemistry",
      "origin": "openalex:1312|Genomics and Phylogenetic Studies",
      "subfield": "molecular-biology"
    }
  ],
  "title": "Voyager: rapid taxonomic characterization of long-read mixed-species sequencing samples in sorted motif distance space.",
  "title_text": "Voyager: rapid taxonomic characterization of long-read mixed-species sequencing samples in sorted motif distance space.",
  "type": "peer-reviewed",
  "updated_at": "2026-11-06T12:22:09Z",
  "url": "https://research.draconitic.com/paper/3g12vd70d4rr2",
  "venue": "Genome biology",
  "versions": []
}