{
  "abstract": "Glial cells are essential for proper nervous system development and function. To understand glial development and function, we comprehensively annotated the glial cells from two large single-cell mRNA-sequencing (scRNA-seq) atlases of the developing Drosophila visual system. This allowed us to identify all glial cell types from larval to adult stages and follow their developmental trajectories to understand how the diversity of glial types is generated during development. We show that whereas most glial types, such as chiasm glia, gradually change their transcriptome as they mature during development, neuropil glia that transcriptionally appear as a single-cell class in larvae, splits into ensheathing (EG) and astrocyte-like (ALG) glia types during pupal stages. We have experimentally validated these developmental trajectories and identified the genetic markers expressed through the differentiation between EG and ALG classes. Unexpectedly, our analysis of scRNA-seq datasets allowed us to discover that the transcriptome of glial cell bodies can be distinguished from that of their processes. We have identified that processes are enriched for distinct mRNAs that were validated in vivo. This work provides the most detailed transcriptomic analysis of optic lobe glia during development and helps explain the expansion of glial diversity observed in the adult visual system. We also present an innovative computational approach to identify mRNA species that are differentially localized to cell bodies or cellular processes.\n\nGlial cells are essential for proper nervous system development and function, but a high resolution view of glial development is lacking. This study analyses longitudinal single-cell RNA sequencing of the fruit fly visual system and reveals how glial diversity arises during development.",
  "abstract_shown": true,
  "affiliations": [
    "Department of Biology, New York University, New York, New York, United States of America",
    "Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates"
  ],
  "article_type": "Methods and Resources",
  "arxiv": null,
  "author_total": 5,
  "authors": [
    {
      "affs": [
        0
      ],
      "name": "Amanda A. G. Ferreira"
    },
    {
      "affs": [
        1
      ],
      "name": "Sergio Córdoba"
    },
    {
      "name": "Raghuvanshi Rajesh"
    },
    {
      "name": "Ben Jiwon Choi"
    },
    {
      "name": "Claude Desplan"
    }
  ],
  "bibtex": "https://research.draconitic.com/paper/5m2s4wd4a4j58.bib",
  "cited_by": 0,
  "doi": "10.1371/journal.pbio.3004015",
  "fulltext_url": "https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3004015",
  "id": "5m2s4wd4a4j58",
  "issns": [
    "1545-7885"
  ],
  "landing_url": "https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3004015",
  "language": null,
  "licence": "CC-BY-4.0",
  "licence_label": "CC BY 4.0",
  "licence_source": "journal",
  "licence_url": "https://creativecommons.org/licenses/by/4.0/",
  "metadata_licence": null,
  "native_subjects": [
    [
      "openalex",
      "1312|Single-cell and spatial transcriptomics"
    ],
    [
      "plos",
      "/Biology and life sciences/Anatomy/Ocular system/Optic lobes"
    ],
    [
      "plos",
      "/Biology and life sciences/Cell biology/Cell processes"
    ],
    [
      "plos",
      "/Biology and life sciences/Cell biology/Cellular types/Animal cells/Glial cells/Neuropil"
    ],
    [
      "plos",
      "/Biology and life sciences/Cell biology/Cellular types/Animal cells/Neurons"
    ],
    [
      "plos",
      "/Biology and life sciences/Cell biology/Cellular types/Animal cells/Neurons/Neuropil"
    ],
    [
      "plos",
      "/Biology and life sciences/Computational biology/Genome analysis/Transcriptome analysis"
    ],
    [
      "plos",
      "/Biology and life sciences/Developmental biology/Life cycles/Larvae"
    ],
    [
      "plos",
      "/Biology and life sciences/Genetics/Gene expression"
    ],
    [
      "plos",
      "/Biology and life sciences/Genetics/Genomics/Genome analysis/Transcriptome analysis"
    ],
    [
      "plos",
      "/Biology and life sciences/Neuroscience/Cellular neuroscience/Neurons"
    ],
    [
      "plos",
      "/Biology and life sciences/Neuroscience/Cellular neuroscience/Neurons/Neuropil"
    ],
    [
      "plos",
      "/Medicine and health sciences/Anatomy/Ocular system/Optic lobes"
    ],
    [
      "plos",
      "/Research and analysis methods/Histochemistry and cytochemistry techniques/Immunohistochemistry techniques"
    ],
    [
      "plos",
      "/Research and analysis methods/Immunologic techniques/Immunohistochemistry techniques"
    ]
  ],
  "openalex": "W7214677921",
  "pdf_url": "https://journals.plos.org/plosbiology/article/file?id=10.1371/journal.pbio.3004015&type=printable",
  "pmcid": null,
  "pmid": null,
  "published": "2026-09-28",
  "publisher": "Public Library of Science",
  "ris": "https://research.draconitic.com/paper/5m2s4wd4a4j58.ris",
  "sources": [
    {
      "first_seen": "2026-10-30T12:17:37Z",
      "native_id": "10.1371/journal.pbio.3004015",
      "source": "plos",
      "url": "https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3004015"
    }
  ],
  "subjects": [
    {
      "field": "biology",
      "origin": "plos:cell biology",
      "subfield": "cell-biology"
    },
    {
      "field": "biology",
      "origin": "plos:neuroscience",
      "subfield": "neuroscience"
    },
    {
      "field": "medicine",
      "origin": "plos:anatomy",
      "subfield": "physiology"
    }
  ],
  "title": "A developmental single-cell atlas of the Drosophila visual system glia reveals cell type diversification and subcellular mRNA compartmentalization",
  "title_text": "A developmental single-cell atlas of the Drosophila visual system glia reveals cell type diversification and subcellular mRNA compartmentalization",
  "type": "peer-reviewed",
  "updated_at": "2026-10-30T12:17:37Z",
  "url": "https://research.draconitic.com/paper/5m2s4wd4a4j58",
  "venue": "PLOS Biology",
  "versions": []
}