{
  "abstract": "Background: Medication adherence is a persistent challenge in the treatment of multidrug-resistant tuberculosis (MDR-TB) and HIV. Routine counseling notes are an underutilized source of information on patient adherence context. Methods: We applied natural language processing (NLP) to routine counseling notes from a randomized controlled trial of MDR-TB/HIV treatment in South Africa. Topics were derived using topic modeling; notes were semantically matched to topics and clustered using K-means. We fitted linear mixed-effects (LME) regression models with participant-level random intercepts and five-fold cross-validation to model adherence to bedaquiline (BDQ) and antiretroviral therapy (ART), measured using cellular-enabled electronic dose monitor (EDM). Cosine similarity scores, cluster assignments, and temporal proximity to counseling sessions were included as covariates. Model fit was assessed using mean absolute error (MAE) and root mean square error (RMSE). Results: We analyzed 327 counseling notes from 76 participants. Six thematic clusters were derived: substance use, logistical barriers, limited social support, side effect management, financial stability, and financial insecurity/low support. LME showed modest fit. For BDQ adherence, MAE was 0.158 (95% CI 0.113–0.204) and RMSE 0.208 (95% CI 0.133–0.283). For ART, MAE was 0.180 (95% CI 0.170–0.191) and RMSE 0.224 (95% CI 0.202–0.246). Cluster membership was not associated with adherence. In contrast, temporal proximity to counseling was more consistently associated with adherence. Adherence was highest immediately following counseling sessions. Both BDQ and ART adherence declined during the intermediate period (β=−0.048, p = 0.001; β=−0.031, p = 0.022, respectively), and ART adherence declined further in the period preceding the next session (β=−0.032, p = 0.020). Conclusion: NLP methods structured routine counseling notes into interpretable, adherence-related themes. Temporal proximity to counseling sessions was consistently associated with longitudinal BDQ and ART adherence. These findings offer preliminary insights into adherence dynamics and generate hypotheses about the role of counseling session timing in adherence support.",
  "abstract_shown": true,
  "affiliations": [
    "Division of Pulmonary, Allergy, and Critical Care Medicine, Columbia University Irving Medical Center, New York, New York, United States of America",
    "Graduate School of Social Work, Touro University, New York, New York, United States of America",
    "School of Applied Human Sciences, University of KwaZulu-Natal, Durban, South Africa",
    "Department of Industrial and Systems Engineering, Lehigh University, Bethlehem, Pennsylvania, United States of America",
    "CAPRISA MRC- HIV-TB Pathogenesis and Treatment Research Unit, Durban, South Africa",
    "Department of Pulmonology and Critical Care, School of Clinical Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa",
    "University of Michigan School of Public Health, Ann Arbor, Michigan, United States of America",
    "Department of Medicine, University of Washington, Seattle, Washington, United States of America",
    "School of Global Health and Dahdaleh Institute of Global Health Research, York University, Toronto, Canada",
    "Department of Epidemiology, Columbia University Irving Medical Center, New York, New York, United States of America"
  ],
  "article_type": "Research Article",
  "arxiv": null,
  "author_total": 15,
  "authors": [
    {
      "affs": [
        0
      ],
      "name": "Xuan Lu"
    },
    {
      "affs": [
        1
      ],
      "name": "Jennifer Zelnick"
    },
    {
      "affs": [
        2
      ],
      "name": "Meng Zhao"
    },
    {
      "affs": [
        3
      ],
      "name": "Matthew Cummings"
    },
    {
      "affs": [
        4
      ],
      "name": "Allison K. Wolf"
    },
    {
      "affs": [
        5
      ],
      "name": "Kevin Guzman"
    },
    {
      "affs": [
        6
      ],
      "name": "Hlengiwe Nyilana"
    },
    {
      "affs": [
        7
      ],
      "name": "Rubeshan Perumal"
    },
    {
      "affs": [
        8
      ],
      "name": "Kathleen Rivet Amico"
    },
    {
      "affs": [
        9
      ],
      "name": "Karl Reis"
    },
    {
      "name": "Mbali Zulu"
    },
    {
      "name": "Amrita Daftary"
    },
    {
      "name": "Boitumelo Seepamore"
    },
    {
      "name": "Kogieleum Naidoo"
    },
    {
      "name": "Max O’Donnell"
    }
  ],
  "bibtex": "https://research.draconitic.com/paper/5tkf5mrvw1459.bib",
  "cited_by": 0,
  "doi": "10.1371/journal.pone.0355696",
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  "id": "5tkf5mrvw1459",
  "issns": [
    "1932-6203"
  ],
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  "language": null,
  "licence": "CC-BY-4.0",
  "licence_label": "CC BY 4.0",
  "licence_source": "journal",
  "licence_url": "https://creativecommons.org/licenses/by/4.0/",
  "metadata_licence": null,
  "native_subjects": [
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  "pmcid": null,
  "pmid": null,
  "published": "2026-10-05",
  "publisher": "Public Library of Science",
  "ris": "https://research.draconitic.com/paper/5tkf5mrvw1459.ris",
  "sources": [
    {
      "first_seen": "2026-10-30T12:17:37Z",
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      "url": "https://doi.org/10.1371/journal.pone.0355696"
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  "subjects": [
    {
      "field": "biology",
      "origin": "plos:immunology",
      "subfield": "immunology"
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  "title": "Temporal proximity to counseling is associated with longitudinal bedaquiline and antiretroviral therapy adherence in multidrug-resistant tuberculosis and HIV treatment",
  "title_text": "Temporal proximity to counseling is associated with longitudinal bedaquiline and antiretroviral therapy adherence in multidrug-resistant tuberculosis and HIV treatment",
  "type": "peer-reviewed",
  "updated_at": "2026-10-30T12:17:37Z",
  "url": "https://research.draconitic.com/paper/5tkf5mrvw1459",
  "venue": "PLOS One",
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