Bioinformatics & computational biology
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- MOFI reveals dynamic multi-omics coordination during cell fate progression
- Cross-Platform Evaluation of a Tumor-Budding-Associated Gene Signature in Colorectal Cancer.
- Scale-resolved correlation functions unify spatial omics across platforms and resolutions
- An integrated data exploration engine of knowledge, expression and genetic association for human transposable elements
- Non-exonic read content reorganises lncRNA co-expression networks in renal and other cancers
- Deciphering Spatial Cellular Organization through RNA-Anchored Multi-Omics Deconvolution
- Longitudinal treatment selection under irreversible discontinuation: History-aware prediction and trajectory-aware learning in peanut-allergy prevention
- DIPLER: rapid k-mer-based locus identification
- A versatile set of computational tools for inference of genetic ancestry from human molecular data
- Reformulating Protein Corona Prediction as Universal Protein-conditioned Learning
- Probabilistic Modelling of Base Editing Efficiency and Bystander Outcome Composition
- Beyond Ramachandran distributions: quantifying secondary structure effects on amino acids and their pairs in the full torsional space
- STARgrid: an open-source pipeline from Visium HD sequencing reads to count matrices
- genomeRxiv: a genome-based identification web server that bridges the gap between taxonomy and strain typing
- Probing Physical Intuition in Large Language Models through Partner-Dependent Mutation Prediction
- CRISCross: Integration of Epigenetic Information for Deep-Learning-Based Prediction of CRISPR-Cas9 Off-Targets Across Cell Types
- Chain of Structures: Connecting Reasoning and Generation for Protein Design
- WarpDemuX-custom - Multiplexed sequence-specific direct RNA sequencing
- kitAb: an automated framework for assay-specific antibody developability modeling and large-scale landscape analysis
- Inferring ecDNA Evolution from Allele Frequency Spectra
- A dual-functional antiviral and anticancer peptide to target intricate host-pathogen interacting proteins of human papillomavirus associated with head and neck cancer
- Benchmarking ensemble and deep learning models for drought-responsive gene prioritisation in rice using multi-omics data
- Process bigraphs and the architecture of compositional systems biology
- A formation-response classifier for borehole deviation using conventional well log data
- Cohort Effects, Not Treatment Response, Dominate Public Immunotherapy Cohorts: Evidence from Microbiome and Tumor Genomic Data