Bioinformatics & computational biology
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- DiffGSP: reversing mRNA diffusion to unlock high-fidelity spatial transcriptomics
- HeartVar: An LLM-Assisted Tool for Clinical Classification of Variants in Cardiovascular Disease Cohorts
- REN-former prioritizes candidate regulators of kidney disease-state transitions through single-cell foundation modeling and human genetics
- Ten numbers from the Laplace-Beltrami spectrum facilitate training-free classification of protein structures based on surface shape
- A foundation model learns the sequence and functional grammar of fully human heavy-chain-only antibodies
- miRAssist: a context-aware, evidence integration framework for interpretable miRNA-target prioritization
- Mechanistic Interpretability of Protein Language Models Reveals Encoded Structural and Functional Properties of Intrinsically Disordered Proteins
- OmniTCR: a foundation model unifying T cell receptor recognition prediction and conditional sequence generation
- Interaction Profiles as a Universal Language for Generative Molecular Design with ShEPhERD-2
- Markov models of SHAPE data improve secondary structure prediction
- Chemical Descriptors and Deep Learning Embeddings for Scoring de novo Peptide Designs
- Real-time accessible phylogenetics for every highly sampled virus
- HypoKG: Evidence-Disciplined Biomedical Hypothesis Generation Beyond Endpoint Knowledge
- Robust POMDP Framework for Lung Cancer Screening Problems
- Biology-in-the-loop: Amortized Adaptive Hit Discovery in CRISPR Screens
- ADMET-EvO: a self-evolving scientific agent for sustained research across heterogeneous tasks
- Representation learning of human cortical folding to reveal long lasting neurodevelopmental signatures
- AET5: A transcriptome-guided molecular generation framework with contrastive self-supervised learning
- ‘PePApipe’: A complete bioinformatics analysis pipeline for African Swine Fever Virus genome
- Adversarial random forests for omics synthesis
- Insight into the mechanism of molecular interactions of the NDM metallo-beta-lactamase and cyclic boronate inhibition by molecular docking and molecular dynamics simulations
- A novel unbiased Linkage Disequilibrium estimator through Random Probing
- ReverseScreen.ai: Pharmacophore-Guided Reverse Screening Across the Growing Co-Complex Proteome
- ProteoformTracker: an interactive tool for planning proteoform detectability in top-down and middle-down proteomics
- Cell-level random splits leak group-owned answers in single-cell benchmarks