Bioinformatics & computational biology
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- The SARS-CoV-2 Integrated Genomic Epidemiology Database (IGED): Linking viral genomes with patient-level metadata to advance statewide genomic surveillance in California
- Storage-Centric System Designs for Enabling Fast, Efficient, and Low-Cost Genomic and Metagenomic Analyses
- Benchmarking Peptide-Protein Affinity Prediction Across Peptide and Target Shifts
- Science sandboxes measure the scientific capability of AI agents
- BROOQS: Quartet-based Resolution of Level-1 Hybridization Cycles without Tests of Symmetry
- An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts
- HiC-LEGO: Biologically Guided High-Resolution 3D Genome Reconstruction Preserves Chromatin Organization at Kilobase Resolution
- Retrieval of binding sites across the AlphaFold human proteome using protein language model representations
- Bio-Babel: autonomous cross-language reconstruction of agent-ready computational biology ecosystems
- Hi-cGAN: Prediction of Hi-C interaction matrices with conditional generative adversarial networks
- An annotation-overlap-flagged rare-disease gene-prioritisation benchmark and PMC index recipe
- Ageas enables time-agnostic cell fate inference from single-cell and spatial multi-omics data
- Kintsugi maps nucleus-poor RNA compartments in subcellular spatial transcriptomics
- Multiparental RNA-seq driven eQTL screening identifies loci underlying host plant fitness in a generalist herbivore
- PalmLab: A Comprehensive Computational Platform for Systematic Annotation and Functional Interrogation of Protein Palmitoylation
- BioIMA: a one-click desktop tool for standardized extraction of phenotypic traits from biological images
- Non-Covalent Poly(ADP-ribose) Signaling Organizes a Circadian E3 Ligase Network in the Brain
- Integrated Transcriptomic and CRISPR Dependency Analysis Prioritizes a CDK1-AURKB Mitotic Vulnerability Axis in Diffuse Intrinsic Pontine Glioma
- LNODE: latent dynamics reveal the shared spatiotemporal structure of amyloid-β progression
- FibrilNet maps conserved and tissue-specific molecular environments across systemic amyloidoses
- Joint ancestry inference reveals the landscape of archaic introgression in admixed populations
- Atlantis: An integrative database for human proteome structural and functional sites
- AGRICAM: A Track-Mounted Crop Pollination Monitoring Robot
- OmniScore: Universal Scoring of Diverse Biomolecular Complexes via Equivariant Geometry-Aware Discrete Representation Learning
- GLORB: Robust Bayesian inference for differential expression underglobal expression shifts