Skip to content
DraconiticResearch
Search Sources API
203,948 studies31 sourcesUpdated 27 min ago
PreprintAll rights reservedbioRxiv

PRISM: probabilistic cell-type resolution with integrated spatial modelling for simultaneous ambient RNA decontamination and doublet correction in spatial transcriptomics

  • F. Cupaioli
  • I. Merelli1
  1. 1CNR-ITB
Read full textPDFDOICite

Related

  1. Accurate and scalable decontamination of imaging-based spatial transcriptomics via optimal transport
    Y. Chen, Y. Liu, Z. Chao +9
    bioRxivPreprintCC BY-NC-NDFull textBioinformatics & computational biologybioRxiv
  2. Probabilistic uncertainty in virtual spatial transcriptomics from histology is largely redundant with the predicted mean
    T. Batique, K. Nonchev, V. H. Koelzer +1
    bioRxivPreprintCC BYFull textBioinformatics & computational biologybioRxiv
  3. Cellular-Resolution Spatial Transcriptomics Reveals Laminar VSMC Phenotypic Remodeling and a Hypoxic Medial Core in Human Thoracic Aortic Dissection
    M. A. Siki, K. Gajera, P. A. Dabek +6
    bioRxivPreprintAll rights reservedFull textGenetics & genomicsbioRxiv
  4. HistoTx: Early fusion of H&E images and spatial transcriptomics at varying spatial transcriptomics resolution with self-supervised learning
    Alice Driessen, Emil Malmsten, Steffen Wolf +11
    arXivPreprintCC BY 4.0Full textBioinformatics & computational biologyGenetics & genomicsarXiv
  5. Integrated Transcriptomics and Histological Analysis Reveals Gill Adaptation Mechanisms to Hypoxic Stress in Largemouth Bass (Micropterus salmoides)
    X. Ma, B. Su, A. Ye +7
    bioRxivPreprintAll rights reservedFull textGenetics & genomicsbioRxiv

Cite

BibTeXRIS
BibTeX
@misc{cupaioli2026prism,
  title = {{PRISM: probabilistic cell-type resolution with integrated spatial modelling for simultaneous ambient RNA decontamination and doublet correction in spatial transcriptomics}},
  author = {F. Cupaioli and I. Merelli},
  howpublished = {bioRxiv},
  year = {2026},
  month = nov,
  doi = {10.64898/2026.11.07.765042},
  url = {https://www.biorxiv.org/content/10.64898/2026.11.07.765042v1},
}
RIS
TY  - UNPB
TI  - PRISM: probabilistic cell-type resolution with integrated spatial modelling for simultaneous ambient RNA decontamination and doublet correction in spatial transcriptomics
AU  - F. Cupaioli
AU  - I. Merelli
PY  - 2026
DA  - 2026/11/07
PB  - bioRxiv
DO  - 10.64898/2026.11.07.765042
UR  - https://www.biorxiv.org/content/10.64898/2026.11.07.765042v1
ER  -