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Peer-reviewedLicence not statedNature Methods

NicheTrans: spatial-aware cross-omics translation

  • Zhikang Wang1,2,3,4,5
  • Qi Zou2,6,3,7
  • Senlin Lin2,8,3,9
  • Sijie Li2,3,10
  • Yan Cui2,3,11
  • Daoliang Zhang2,3,12
  • Chuangyi Han2,3,13
  • Yida Li1,4,7
  • Jianmin Li14,9
  • Yi Chen Zhao8,5
  • Rui Gao6,11
  • Jiangning Song15,16
1 more authors
  • Zhiyuan Yuan17,18
18 affiliations
  1. 1Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, Australia
  2. 2Center for Integrative Spatial-Omics Research, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China
  3. 3Institute of Science and Technology for Brain-Inspired Intelligence, Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China
  4. 4Monash AI Institute, Monash University, Melbourne, Victoria, Australia
  5. 5Monash University
  6. 6Center of Intelligent Medicine, School of Control Science and Engineering, Shandong University, Jinan, China
  7. 7Institute of Computing Technology
  8. 8Institute of Computing Technology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China
  9. 9Shandong University
  10. 10Kyoto University
  11. 11Fudan University
  12. 12The First Affiliated Hospital of Wenzhou Medical University
  13. 13Hospital of Wenzhou Medical University
  14. 14Department of Pathology, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China
  15. 15Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, Australia. [email protected]
  16. 16Monash AI Institute, Monash University, Melbourne, Victoria, Australia. [email protected]
  17. 17Center for Integrative Spatial-Omics Research, MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China. [email protected]
  18. 18Institute of Science and Technology for Brain-Inspired Intelligence, Center for Medical Research and Innovation, Shanghai Pudong Hospital, Fudan University Pudong Medical Center, Fudan University, Shanghai, China. [email protected]
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Cite

BibTeXRIS
BibTeX
@article{wang2026nichetrans,
  title = {{NicheTrans: spatial-aware cross-omics translation}},
  author = {Zhikang Wang and Qi Zou and Senlin Lin and Sijie Li and Yan Cui and Daoliang Zhang and Chuangyi Han and Yida Li and Jianmin Li and Yi Chen Zhao and Rui Gao and Jiangning Song and Zhiyuan Yuan},
  journal = {Nature Methods},
  year = {2026},
  month = jul,
  doi = {10.1038/s41592-026-03153-3},
  url = {https://doi.org/10.1101/2024.12.05.626986},
}
RIS
TY  - JOUR
TI  - NicheTrans: spatial-aware cross-omics translation
AU  - Zhikang Wang
AU  - Qi Zou
AU  - Senlin Lin
AU  - Sijie Li
AU  - Yan Cui
AU  - Daoliang Zhang
AU  - Chuangyi Han
AU  - Yida Li
AU  - Jianmin Li
AU  - Yi Chen Zhao
AU  - Rui Gao
AU  - Jiangning Song
AU  - Zhiyuan Yuan
PY  - 2026
DA  - 2026/07/09
JO  - Nature Methods
DO  - 10.1038/s41592-026-03153-3
UR  - https://doi.org/10.1101/2024.12.05.626986
SN  - 1548-7091
SN  - 1548-7105
ER  -