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Strong NP-Hardness of Rank-2 Nonnegative Matrix Factorization

Abstract

Nonnegative matrix factorization (NMF) approximates a nonnegative matrix by the product of two nonnegative matrices with a prescribed inner dimension~r. The existence of an exact NMF can be decided in polynomial time for every fixed~r, and a best rank-$1$ NMF in the Frobenius norm can be obtained from a truncated singular value decomposition. We prove that computing a best rank-$2$ NMF in the Frobenius norm is strongly NP-hard. Our proof uses a polynomial-time reduction from \textsc{Clique} that produces symmetric positive-definite, completely positive matrices with polynomially bounded integer entries. The same reduction also establishes strong NP-hardness of rank-$2$ symmetric NMF.

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BibTeX
@misc{vandaele2026strong,
  title = {{Strong NP-Hardness of Rank-2 Nonnegative Matrix Factorization}},
  author = {Arnaud Vandaele},
  howpublished = {arXiv},
  year = {2026},
  month = oct,
  doi = {10.48550/arxiv.2610.21874},
  eprint = {2610.21874},
  archivePrefix = {arXiv},
  url = {https://arxiv.org/abs/2610.21874},
}
RIS
TY  - UNPB
TI  - Strong NP-Hardness of Rank-2 Nonnegative Matrix Factorization
AU  - Arnaud Vandaele
PY  - 2026
DA  - 2026/10/15
PB  - arXiv
DO  - 10.48550/arxiv.2610.21874
UR  - https://arxiv.org/abs/2610.21874
AB  - Nonnegative matrix factorization (NMF) approximates a nonnegative matrix by the product of two nonnegative matrices with a prescribed inner dimension~r. The existence of an exact NMF can be decided in polynomial time for every fixed~r, and a best rank-$1$ NMF in the Frobenius norm can be obtained from a truncated singular value decomposition. We prove that computing a best rank-$2$ NMF in the Frobenius norm is strongly NP-hard. Our proof uses a polynomial-time reduction from \textsc{Clique} that produces symmetric positive-definite, completely positive matrices with polynomially bounded integer entries. The same reduction also establishes strong NP-hardness of rank-$2$ symmetric NMF.
ER  -