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Peer-reviewedCC BYNPJ precision oncology

Precision oncology in advanced melanoma: molecular landscapes and personalized therapy recommendations from the Molecular Tumor Board Freiburg.

21 more authors
11 affiliations
  1. 1Department of Medicine I-Medical Centre-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  2. 2Comprehensive Cancer Center Freiburg, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  3. 3Institute of Medical Bioinformatics and Systems Medicine (IBSM), Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  4. 4German Cancer Consortium (DKTK), Partner Site Freiburg, a partnership between DKFZ and Medical Center-University of Freiburg, Freiburg, Germany.
  5. 5Institute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  6. 6Institute for Surgical Pathology, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  7. 7Department of Dermatology and Venereology-Medical Centre-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
  8. 8Department of Hematology and Medical Oncology, University Medical Center Göttingen, Göttingen, Germany.
  9. 9Department of Medicine III, Faculty of Medicine, Klinikum Rechts der Isar, Technical University Munich (TUM), Munich, Germany.
  10. 10Center of Personalized Medicine, Technical University of Munich (TUM), University Hospital, Technical University of Munich, Munich, Germany.
  11. 11Department of Dermatology and Venereology-Medical Centre-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany. [email protected].

Abstract

Immune checkpoint inhibitors (ICIs) and BRAF/MEK kinase inhibitors have substantially improved survival in advanced melanoma; however, therapeutic resistance and severe toxicities underscore the ongoing need for alternative strategies. Here, we evaluate the clinical utility of multi-omic profiling, biomarker-stratified recommendations, and survival outcomes within a prospective cohort of 98 patients with advanced cutaneous or uveal melanoma evaluated by the Molecular Tumor Board Freiburg (MTB-FR) between 2021 and 2024. Completed profiling revealed at least one potential actionable target beyond classical BRAF V600 mutations in 83.8% of cases. Alterations in NRAS, atypical BRAF variants, CDK4/6 pathway amplifications, and DNA-damage response (DDR) gene mutations most frequently guided board recommendations. Biomarker-stratified therapies were recommended for 68.4% of patients, and personalized immunotherapy combinations for 72.4%. The treatment implementation rate was 33.8% (n = 27), achieving an overall disease control rate (DCR) of 42.9% and an overall response rate (ORR) of 10.7%. These findings demonstrate that comprehensive molecular profiling in a real-world setting uncovers actionable alterations, providing viable subsequent treatment avenues that may optimize outcomes for heavily pretreated melanoma patients beyond established standards of care. Ultimately, prospective, randomized, biomarker-driven trials remain essential to validate whether these individualized diagnostic strategies translate into a reproducible survival benefit.

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BibTeX
@article{lowinus2026precision,
  title = {{Precision oncology in advanced melanoma: molecular landscapes and personalized therapy recommendations from the Molecular Tumor Board Freiburg.}},
  author = {T Lowinus and V Schipperges and P Metzger and T Brummer and U Matysiak and E P Dopfer and M E Hess and M Fahrner and T Pauli and A Blaumeiser and H Becker and J Kuehn and M Rassner and J Falkenstein and H Bertemes and P Bovio and N Pinter and S Cysar and S Lehr and R Wäsch and L Gräßel and K Eyerich and A M Schultheis and O Schilling and S Lassmann and M Werner and A L Illert and J Duyster and R Zeiser and C C Miething and M Boerries and F Meiss and D Rafei},
  journal = {NPJ precision oncology},
  year = {2026},
  month = oct,
  doi = {10.1038/s41698-026-01763-w},
  url = {https://europepmc.org/article/MED/42907470},
  note = {CC BY},
}
RIS
TY  - JOUR
TI  - Precision oncology in advanced melanoma: molecular landscapes and personalized therapy recommendations from the Molecular Tumor Board Freiburg.
AU  - T Lowinus
AU  - V Schipperges
AU  - P Metzger
AU  - T Brummer
AU  - U Matysiak
AU  - E P Dopfer
AU  - M E Hess
AU  - M Fahrner
AU  - T Pauli
AU  - A Blaumeiser
AU  - H Becker
AU  - J Kuehn
AU  - M Rassner
AU  - J Falkenstein
AU  - H Bertemes
AU  - P Bovio
AU  - N Pinter
AU  - S Cysar
AU  - S Lehr
AU  - R Wäsch
AU  - L Gräßel
AU  - K Eyerich
AU  - A M Schultheis
AU  - O Schilling
AU  - S Lassmann
AU  - M Werner
AU  - A L Illert
AU  - J Duyster
AU  - R Zeiser
AU  - C C Miething
AU  - M Boerries
AU  - F Meiss
AU  - D Rafei
PY  - 2026
DA  - 2026/10/21
JO  - NPJ precision oncology
DO  - 10.1038/s41698-026-01763-w
UR  - https://europepmc.org/article/MED/42907470
AB  - Immune checkpoint inhibitors (ICIs) and BRAF/MEK kinase inhibitors have substantially improved survival in advanced melanoma; however, therapeutic resistance and severe toxicities underscore the ongoing need for alternative strategies. Here, we evaluate the clinical utility of multi-omic profiling, biomarker-stratified recommendations, and survival outcomes within a prospective cohort of 98 patients with advanced cutaneous or uveal melanoma evaluated by the Molecular Tumor Board Freiburg (MTB-FR) between 2021 and 2024. Completed profiling revealed at least one potential actionable target beyond classical BRAF V600 mutations in 83.8% of cases. Alterations in NRAS, atypical BRAF variants, CDK4/6 pathway amplifications, and DNA-damage response (DDR) gene mutations most frequently guided board recommendations. Biomarker-stratified therapies were recommended for 68.4% of patients, and personalized immunotherapy combinations for 72.4%. The treatment implementation rate was 33.8% (n = 27), achieving an overall disease control rate (DCR) of 42.9% and an overall response rate (ORR) of 10.7%. These findings demonstrate that comprehensive molecular profiling in a real-world setting uncovers actionable alterations, providing viable subsequent treatment avenues that may optimize outcomes for heavily pretreated melanoma patients beyond established standards of care. Ultimately, prospective, randomized, biomarker-driven trials remain essential to validate whether these individualized diagnostic strategies translate into a reproducible survival benefit.
SN  - 2397-768X
ER  -