The uplift of the Qinghai-Tibetan Plateau reshaped genome architecture and diversification of Asian torrent catfishes
- 1Institute of Hydrobiology, Chinese Academy of Sciences
Abstract
Tectonic uplift and mountain building are major drivers of species diversification and adaptation, yet how they reshape genome architecture and promote evolutionary innovation remains poorly understood. Here, we generated multiple chromosome-level genomes for Asian torrent catfishes (Sisoridae) and performed phylogenomic and comparative genomic analyses. Our results support an Asian origin of Sisoridae and provide a refined phylogenetic topology for catfishes. Comparative analyses revealed extensive chromosomal rearrangements during sisorid evolution, indicating highly dynamic genome architectures. The timing of sisorid diversification overlaps with major phases of regional tectonic change, and analyses of phylogenetic discordance indicate heterogeneous contributions from incomplete lineage sorting and introgression. Elevational distribution was associated with variation in estimated molecular evolutionary rates, while exploratory scans identified lineage-specific candidates for selection and convergent evolution. Candidate coding and non-coding changes occur near genes with known roles in fin development, body patterning, and liver biology, but their effects on sisorid traits remain to be tested. Together, our results demonstrate how tectonic uplift reshaped genome architecture and diversification in Asian torrent catfishes and provide new insights into the genomic basis of adaptation in mountainous freshwater ecosystems.
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BibTeX
@misc{yang2026uplift,
title = {{The uplift of the Qinghai-Tibetan Plateau reshaped genome architecture and diversification of Asian torrent catfishes}},
author = {L. Yang and Y. Qian and M. Meng and T. Mao and w. chen and Z. Ding and Y. Liu and L. Zheng and C. Wang and X. Gan and Y. Chen and S. He},
howpublished = {bioRxiv},
year = {2026},
month = sep,
doi = {10.64898/2026.09.30.755532},
url = {https://www.biorxiv.org/content/10.64898/2026.09.30.755532v1},
note = {CC BY},
}
RIS
TY - UNPB
TI - The uplift of the Qinghai-Tibetan Plateau reshaped genome architecture and diversification of Asian torrent catfishes
AU - L. Yang
AU - Y. Qian
AU - M. Meng
AU - T. Mao
AU - w. chen
AU - Z. Ding
AU - Y. Liu
AU - L. Zheng
AU - C. Wang
AU - X. Gan
AU - Y. Chen
AU - S. He
PY - 2026
DA - 2026/09/30
PB - bioRxiv
DO - 10.64898/2026.09.30.755532
UR - https://www.biorxiv.org/content/10.64898/2026.09.30.755532v1
AB - Tectonic uplift and mountain building are major drivers of species diversification and adaptation, yet how they reshape genome architecture and promote evolutionary innovation remains poorly understood. Here, we generated multiple chromosome-level genomes for Asian torrent catfishes (Sisoridae) and performed phylogenomic and comparative genomic analyses. Our results support an Asian origin of Sisoridae and provide a refined phylogenetic topology for catfishes. Comparative analyses revealed extensive chromosomal rearrangements during sisorid evolution, indicating highly dynamic genome architectures. The timing of sisorid diversification overlaps with major phases of regional tectonic change, and analyses of phylogenetic discordance indicate heterogeneous contributions from incomplete lineage sorting and introgression. Elevational distribution was associated with variation in estimated molecular evolutionary rates, while exploratory scans identified lineage-specific candidates for selection and convergent evolution. Candidate coding and non-coding changes occur near genes with known roles in fin development, body patterning, and liver biology, but their effects on sisorid traits remain to be tested. Together, our results demonstrate how tectonic uplift reshaped genome architecture and diversification in Asian torrent catfishes and provide new insights into the genomic basis of adaptation in mountainous freshwater ecosystems.
ER -