In situ pulse dispersion estimation via third-harmonic generation interferometric autocorrelation for multiphoton microscopy
- 1Yale University
Abstract
Three-photon microscopy enables deep-tissue imaging but is highly sensitive to excitation pulse quality, since three-photon excitation efficiency scales with the cube of instantaneous intensity. Group-delay dispersion (GDD) and third-order dispersion (TOD) accumulated through the laser and microscope optics can substantially reduce peak intensity at the focal plane, yet these quantities are rarely measured where imaging occurs. Here, we use third-harmonic generation (THG) interferometric autocorrelation, together with Dispersion Look-Up-Table Estimation (D-LUTE) and a joint two-measurement fitting procedure validated on synthetic data, to estimate baseline GDD and TOD directly at the objective focal plane, requiring only a compact autocorrelator module added to the microscope beam path. Applying this method at 1300 nm and 1600 nm excitation across two microscope systems equipped with different units of the same laser model, we find pulse durations 1.4- to 1.7-fold longer than the transform limit at every condition, driven predominantly by TOD, which varied by roughly 2.7-fold between the two systems. Using the endogenous THG signal from myelinated fibers, we further demonstrate in vivo pulse characterization in the mouse brain, finding no measurable broadening between the tissue surface and a depth of nearly a millimeter. This low-cost, easily implemented approach enables routine, in situ pulse monitoring across multiphoton microscopy platforms.
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BibTeX
@misc{shaughnessy2026situ,
title = {{In situ pulse dispersion estimation via third-harmonic generation interferometric autocorrelation for multiphoton microscopy}},
author = {L. Shaughnessy and L. Vannell and S. Fernando-Peiris and C. Rodriguez},
howpublished = {bioRxiv},
year = {2026},
month = aug,
doi = {10.64898/2026.08.04.742801},
url = {https://www.biorxiv.org/content/10.64898/2026.08.04.742801v2},
note = {CC BY},
}
RIS
TY - UNPB
TI - In situ pulse dispersion estimation via third-harmonic generation interferometric autocorrelation for multiphoton microscopy
AU - L. Shaughnessy
AU - L. Vannell
AU - S. Fernando-Peiris
AU - C. Rodriguez
PY - 2026
DA - 2026/08/04
PB - bioRxiv
DO - 10.64898/2026.08.04.742801
UR - https://www.biorxiv.org/content/10.64898/2026.08.04.742801v2
AB - Three-photon microscopy enables deep-tissue imaging but is highly sensitive to excitation pulse quality, since three-photon excitation efficiency scales with the cube of instantaneous intensity. Group-delay dispersion (GDD) and third-order dispersion (TOD) accumulated through the laser and microscope optics can substantially reduce peak intensity at the focal plane, yet these quantities are rarely measured where imaging occurs. Here, we use third-harmonic generation (THG) interferometric autocorrelation, together with Dispersion Look-Up-Table Estimation (D-LUTE) and a joint two-measurement fitting procedure validated on synthetic data, to estimate baseline GDD and TOD directly at the objective focal plane, requiring only a compact autocorrelator module added to the microscope beam path. Applying this method at 1300 nm and 1600 nm excitation across two microscope systems equipped with different units of the same laser model, we find pulse durations 1.4- to 1.7-fold longer than the transform limit at every condition, driven predominantly by TOD, which varied by roughly 2.7-fold between the two systems. Using the endogenous THG signal from myelinated fibers, we further demonstrate in vivo pulse characterization in the mouse brain, finding no measurable broadening between the tissue surface and a depth of nearly a millimeter. This low-cost, easily implemented approach enables routine, in situ pulse monitoring across multiphoton microscopy platforms.
ER -