Skip to content
DraconiticResearch
Search Sources API
203,952 studies31 sourcesUpdated 39 min ago
Peer-reviewedCC BY 4.0Scientific Reports

An accuracy and calibration benchmark of scGPT pipelines and matched classical models for cell type annotation

Related

  1. Diagnostic probes reveal shortcuts induced by the benchmark protocol in vision-language model annotation pipelines for video-based self-harm detection
    Yourack Lee, Hyun-Ghang Jeong, Hyun-Soo Choi
    Scientific ReportsPeer-reviewedCC BY 4.0Crossref
  2. Cell-type separability predicts annotation accuracy and outweighs algorithm choice: a factorial benchmark across seven scRNA paradigms
    O. Wardhana, Z. Zeng, X. Lu
    bioRxivPreprintCC BYFull text1 citedBioinformatics & computational biologybioRxiv
  3. FlowReconBench: Accuracy, calibration and cost of learned and classical flow reconstruction from sparse sensors
    Nicolas Tricard, Linzheng Wang, Jason Chen +1
    arXivPreprintCC BY 4.0Full textFluid dynamicsarXiv
  4. scBOA: Bayesian optimization of single-cell analysis pipelines for robust annotation and discovery
    Qiang Su, Yi Long, Fuyu Duan +1
    Nature CommunicationsPeer-reviewedCC BY-NC-ND 4.0Full textMolecular biology & gene regulationCrossref
  5. SCADA-based multiobjective calibration of hydraulic models for multi-fluid petroleum pipelines
    Alon Mandel, Mashor Housh
    Scientific ReportsPeer-reviewedCC BY-NC-ND 4.0Full textCrossref
BibTeX
@article{khosravi2026accuracy,
  title = {{An accuracy and calibration benchmark of scGPT pipelines and matched classical models for cell type annotation}},
  author = {Alireza Khosravi and Arshia Khosravi and Kamil Łangowski and Michał Sieczczyński and Krzysztof Pastuszak and Anna Supernat and Anna J. Żaczek},
  journal = {Scientific Reports},
  year = {2026},
  month = nov,
  doi = {10.1038/s41598-026-77853-3},
  url = {https://www.nature.com/articles/s41598-026-77853-3},
  note = {CC BY 4.0},
}
RIS
TY  - JOUR
TI  - An accuracy and calibration benchmark of scGPT pipelines and matched classical models for cell type annotation
AU  - Alireza Khosravi
AU  - Arshia Khosravi
AU  - Kamil Łangowski
AU  - Michał Sieczczyński
AU  - Krzysztof Pastuszak
AU  - Anna Supernat
AU  - Anna J. Żaczek
PY  - 2026
DA  - 2026/11/05
JO  - Scientific Reports
DO  - 10.1038/s41598-026-77853-3
UR  - https://www.nature.com/articles/s41598-026-77853-3
SN  - 2045-2322
ER  -