Noncoding RNAs in Nuclear Condensates and RNA Processing in Skeletal Muscle
- 1Department of Biochemistry, College of Medicine, Dongguk University, 123 Dongdae-ro, Gyeongju 38066, Republic of Korea
- 2Medical Research Institute, College of Medicine, Dongguk University, 123 Dongdae-ro, Gyeongju 38066, Republic of Korea
Abstract
Spatial organization in the nucleus is an active layer of RNA regulation in skeletal muscle, yet localization is often interpreted more strongly than the evidence permits. This critical review compares physiological nuclear RNA compartments with pathological repeat-RNA assemblies using a graded evidence framework. NEAT1-associated paraspeckles provide the clearest muscle-linked example of an RNA-marked nuclear body, although isoform-specific architectural causality remains untested in muscle. MALAT1 regulates speckle-associated splicing-factor and chromatin states but is dispensable for gross speckle formation, and muscle studies report opposing differentiation phenotypes. Nucleolar FRG2 transcripts in facioscapulohumeral muscular dystrophy connect spatial RNA organization to rDNA transcription and translational capacity. Expanded DMPK CUG and CNBP CCUG RNAs in myotonic dystrophy sequester processing factors and drive spliceopathy, although calibrated imaging in patient-derived DM1 myotubes indicates that most apparent foci are individual retained transcripts rather than bulk condensates. The framework distinguishes spatial association, molecular participation, functional necessity, in vivo relevance, and therapeutic target engagement. It also maps interventions to toxic-RNA abundance, RNA–protein binding, repeat-locus transcription, downstream splicing, or compartment state. Together, this evidence-based synthesis identifies which nuclear RNA mechanisms are established in muscle, which remain extrapolated from non-muscle systems, and which experiments are required before therapeutic modulation can be interpreted mechanistically.
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BibTeX
@article{ngo2026noncoding,
title = {{Noncoding RNAs in Nuclear Condensates and RNA Processing in Skeletal Muscle}},
author = {Thanh Huu Phan Ngo and Wan Lee},
journal = {International Journal of Molecular Sciences},
year = {2026},
month = oct,
doi = {10.3390/ijms27219713},
url = {https://www.mdpi.com/1422-0067/27/21/9713},
note = {CC BY 4.0},
}
RIS
TY - JOUR
TI - Noncoding RNAs in Nuclear Condensates and RNA Processing in Skeletal Muscle
AU - Thanh Huu Phan Ngo
AU - Wan Lee
PY - 2026
DA - 2026/10/29
JO - International Journal of Molecular Sciences
DO - 10.3390/ijms27219713
UR - https://www.mdpi.com/1422-0067/27/21/9713
AB - Spatial organization in the nucleus is an active layer of RNA regulation in skeletal muscle, yet localization is often interpreted more strongly than the evidence permits. This critical review compares physiological nuclear RNA compartments with pathological repeat-RNA assemblies using a graded evidence framework. NEAT1-associated paraspeckles provide the clearest muscle-linked example of an RNA-marked nuclear body, although isoform-specific architectural causality remains untested in muscle. MALAT1 regulates speckle-associated splicing-factor and chromatin states but is dispensable for gross speckle formation, and muscle studies report opposing differentiation phenotypes. Nucleolar FRG2 transcripts in facioscapulohumeral muscular dystrophy connect spatial RNA organization to rDNA transcription and translational capacity. Expanded DMPK CUG and CNBP CCUG RNAs in myotonic dystrophy sequester processing factors and drive spliceopathy, although calibrated imaging in patient-derived DM1 myotubes indicates that most apparent foci are individual retained transcripts rather than bulk condensates. The framework distinguishes spatial association, molecular participation, functional necessity, in vivo relevance, and therapeutic target engagement. It also maps interventions to toxic-RNA abundance, RNA–protein binding, repeat-locus transcription, downstream splicing, or compartment state. Together, this evidence-based synthesis identifies which nuclear RNA mechanisms are established in muscle, which remain extrapolated from non-muscle systems, and which experiments are required before therapeutic modulation can be interpreted mechanistically.
SN - 1422-0067
ER -