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PreprintCC BYChemRxiv

Assessing the state of the art in ADMET prediction: Lessons from the OpenADMET-ExpansionRx community blind challenge

94 more authors

60 listed; 106 in total.

40 affiliations
  1. 1Open Molecular Software Foundation
  2. 2Expansion Therapeutics
  3. 3Hugging Face AI4Science
  4. 4Faculty of Science and Engineering, Antonius Deusinglaan 1, Groningen, Netherlands, 9713
  5. 5Simulations Plus, Inc.
  6. 6Graduate Center
  7. 7City University of New York
  8. 8Independent Researcher
  9. 9AIDRx Strategy Consulting Ltd
  10. 10VIB Discovery Sciences
  11. 11Aptuit (Verona) Srl, an Evotec Company
  12. 12Department of Medicinal Chemistry and Drug Design, Merck Healthcare KGaA, Frankfurter Str. 250, Darmstadt, Germany, 64293
  13. 13Evotec (France) SAS
  14. 14Department of Chemical Engineering
  15. 15Massachusetts Institute of Technology
  16. 16School of Pharmacy
  17. 17University of Pittsburgh
  18. 18Novalix
  19. 19Faculty of Chemical Technology
  20. 20University of
  21. 21QuantaBricks LLC, 211 Warren Street, Newark, NJ
  22. 22Merck & Co., Inc.
  23. 23Shiv Nadar University
  24. 24Commonwealth Scientific and Industrial Research Organisation (CSIRO
  25. 25École Polytechnique Fédérale de Lausanne (EPFL
  26. 26deepmirror
  27. 27Schrödinger, Inc.
  28. 28Department of Biostatistics and Medical Informatics
  29. 29University of Wisconsin-Madison & Morgridge Institute for Research
  30. 30Institute of Pharmaceutical and Medicinal Chemistry
  31. 31University of Münster
  32. 32Lomonosov Moscow State University (MSU
  33. 33Independent Consultant
  34. 34Apheris
  35. 35LIFE Pharma FZE
  36. 36Francis Crick Institute
  37. 37University College London (UCL
  38. 38thinkMolecular Technologies Bengaluru
  39. 39Department of Physical Chemistry of Drugs, Faculty of Pharmacy
  40. 40Comenius University Bratislava

Abstract

Computational blind challenges are essential for advancing drug discovery, especially in research areas with limited public data, such as absorption, distribution, metabolism, excretion, toxicity (ADMET) prediction. In this paper, we present the results of our latest community blind challenge, organized in collaboration with Expansion Therapeutics (ExpansionRx). Participants were tasked with predicting nine distinct ADMET endpoints routinely evaluated during lead optimization of compounds in drug discovery programs. Following unprecedented engagement from the global community, this challenge provided valuable insights into the state of the art in machine learning for ADMET modeling. Evaluating submissions against a realistic, challenging dataset from active ExpansionRx drug discovery programs revealed that message-passing neural networks and chemical foundation models dominated among the top performers. Furthermore, the results highlighted the power of proprietary industry datasets and a critical need to optimize predictive workflows for different endpoints independently via multitasking and task-affinity grouping. We also demonstrate how hosting our open-source blind challenge infrastructure on a flexible platform like Hugging Face was pivotal for driving community engagement and visibility. Ultimately, blind challenges supported by robust infrastructure, widespread dissemination, and rigorous post-challenge analysis are fundamental to maximizing the utility of public data releases. We anticipate that these community benchmarks will continue to drive the advancement of ADMET models, enabling their deployment in both early- and late-stage drug discovery.

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BibTeX
@misc{castellanos2026assessing,
  title = {{Assessing the state of the art in ADMET prediction: Lessons from the OpenADMET-ExpansionRx community blind challenge}},
  author = {Maria A. Castellanos and Hugo MacDermott-Opeskin and Jon Ainsley and Jonathan A. Swain and Sean Colby and Devany West and Georgia Channing and Andrew Good and Elyse Bourque and Lakshminarayana Vogeti and Renato Skerlj and Tiansheng Wang and Mark Ledeboer and David Alencar Araripe and Rafal Bachorz and Amitesh Badkul and Maximilian Beckers and Jérémy Besnard and Olivier Beyens and Maicol Bissaro and Davide Boldini and Laetitia Breuil and Jackson W Burns and Lianjin Cai and Ruel Cedeno and Joanna Ceklarz and Xin Chen and Alan C. Cheng and Vishnu Vardhan Chundu and Vladimir Chupakhin and Thomas Coudrat and Simon Crouzet and Daniel Crusius and Wim Dehaen and Valeriia Fil and Robert Fraczkiewicz and Jozef Fülöp and Enrico Gandini and David Giganti and Anthony Gitter and Alec Glisman and Pawel Gniewek and Ryan Greenhalgh and Malte Grieswelle and Oleg Gromov and Sudhir Gupta and Leonard F. Haasbroek and Calum Hand and Xibing He and Dimitrios Iliadis and Abdul Haleem Mohamed Iliiyas and Eachan Johnson and Kalen Josifovski and Shivananda Kandagalla and Lukas Kerti and Oliver Koch and Vaishnavi Kodamala and Stephanie Labouille and Shaolong Lin and Dmitriy Makarov},
  howpublished = {ChemRxiv},
  year = {2026},
  month = sep,
  doi = {10.26434/chemrxiv.15009342/v1},
  url = {https://chemrxiv.org/doi/full/10.26434/chemrxiv.15009342/v1},
  note = {CC BY},
}
RIS
TY  - UNPB
TI  - Assessing the state of the art in ADMET prediction: Lessons from the OpenADMET-ExpansionRx community blind challenge
AU  - Maria A. Castellanos
AU  - Hugo MacDermott-Opeskin
AU  - Jon Ainsley
AU  - Jonathan A. Swain
AU  - Sean Colby
AU  - Devany West
AU  - Georgia Channing
AU  - Andrew Good
AU  - Elyse Bourque
AU  - Lakshminarayana Vogeti
AU  - Renato Skerlj
AU  - Tiansheng Wang
AU  - Mark Ledeboer
AU  - David Alencar Araripe
AU  - Rafal Bachorz
AU  - Amitesh Badkul
AU  - Maximilian Beckers
AU  - Jérémy Besnard
AU  - Olivier Beyens
AU  - Maicol Bissaro
AU  - Davide Boldini
AU  - Laetitia Breuil
AU  - Jackson W Burns
AU  - Lianjin Cai
AU  - Ruel Cedeno
AU  - Joanna Ceklarz
AU  - Xin Chen
AU  - Alan C. Cheng
AU  - Vishnu Vardhan Chundu
AU  - Vladimir Chupakhin
AU  - Thomas Coudrat
AU  - Simon Crouzet
AU  - Daniel Crusius
AU  - Wim Dehaen
AU  - Valeriia Fil
AU  - Robert Fraczkiewicz
AU  - Jozef Fülöp
AU  - Enrico Gandini
AU  - David Giganti
AU  - Anthony Gitter
AU  - Alec Glisman
AU  - Pawel Gniewek
AU  - Ryan Greenhalgh
AU  - Malte Grieswelle
AU  - Oleg Gromov
AU  - Sudhir Gupta
AU  - Leonard F. Haasbroek
AU  - Calum Hand
AU  - Xibing He
AU  - Dimitrios Iliadis
AU  - Abdul Haleem Mohamed Iliiyas
AU  - Eachan Johnson
AU  - Kalen Josifovski
AU  - Shivananda Kandagalla
AU  - Lukas Kerti
AU  - Oliver Koch
AU  - Vaishnavi Kodamala
AU  - Stephanie Labouille
AU  - Shaolong Lin
AU  - Dmitriy Makarov
PY  - 2026
DA  - 2026/09/23
PB  - ChemRxiv
DO  - 10.26434/chemrxiv.15009342/v1
UR  - https://chemrxiv.org/doi/full/10.26434/chemrxiv.15009342/v1
AB  - Computational blind challenges are essential for advancing drug discovery, especially in research areas with limited public data, such as absorption, distribution, metabolism, excretion, toxicity (ADMET) prediction. In this paper, we present the results of our latest community blind challenge, organized in collaboration with Expansion Therapeutics (ExpansionRx). Participants were tasked with predicting nine distinct ADMET endpoints routinely evaluated during lead optimization of compounds in drug discovery programs. Following unprecedented engagement from the global community, this challenge provided valuable insights into the state of the art in machine learning for ADMET modeling. Evaluating submissions against a realistic, challenging dataset from active ExpansionRx drug discovery programs revealed that message-passing neural networks and chemical foundation models dominated among the top performers. Furthermore, the results highlighted the power of proprietary industry datasets and a critical need to optimize predictive workflows for different endpoints independently via multitasking and task-affinity grouping. We also demonstrate how hosting our open-source blind challenge infrastructure on a flexible platform like Hugging Face was pivotal for driving community engagement and visibility. Ultimately, blind challenges supported by robust infrastructure, widespread dissemination, and rigorous post-challenge analysis are fundamental to maximizing the utility of public data releases. We anticipate that these community benchmarks will continue to drive the advancement of ADMET models, enabling their deployment in both early- and late-stage drug discovery.
ER  -