Shapley fields reveal mosaic chemotopic organization in the mouse Olfactory bulb across diverse chemical feature sets
- 1Department of Mathematical Sciences, University of Texas, El Paso, Texas, United States of America
- 2Department of Neurobiology, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
- 3Department of Mathematics, The Pennsylvania State University, University Park, Texas, Pennsylvania, United States of America
Abstract
Neural representations in the olfactory bulb (OB) remain poorly understood compared to well-established coding principles in other sensory systems. This difficulty arises because a natural coordinate system for olfactory stimulus space has not yet been identified, complicating the characterization of neural receptive fields analogous to those in other sensory modalities. Moreover, the extent to which these tuning properties are spatially organized within the OB remains unclear. To advance our understanding of the olfactory coding, we introduce an interpretable method of Shapley fields, as an olfactory analog of retinotopic receptive fields. Shapley fields are spatial distributions of chemical feature importance for the tuning of OB glomeruli. We used this tool to investigate chemotopy in the OB with diverse sets of chemical features using widefield epifluorescence recordings of the mouse dorsal OB in response to stimuli across a wide range of the chemical space. We found that Shapley fields reveal a weak chemotopic organization of the chemical feature sensitivity of dorsal OB glomeruli. This organization was consistent across animals and mostly agreed across very different chemical feature sets: (i) the expert-curated PubChem database features and (ii) features derived from a Graph Neural Network trained on human olfactory perceptual tasks. This chemotopy involved at least three chemical feature dimensions, rather than one or two dominant properties. Moreover, we found that the principal components of the Shapley fields corresponded to single commonly accepted chemical classification groups. This implies that these chemical groups could have been identified purely from the mouse olfactory responses. Our findings suggest that Shapley fields may serve as a chemical feature-agnostic method for investigating olfactory perception. Author summary: The sense of smell remains poorly understood compared with other sensory systems in the mammalian brain. This is because there is little understanding of how specific chemical features drive olfactory perception and how these features are spatially organized within the olfactory bulb. We introduce a novel method for understanding the coding properties of olfactory processing in the mammalian brain. Using neural activity in the mouse olfactory bulb, we characterized the non-random organization of chemical sensitivity across the surface of the olfactory bulb. We also found that the chemical sensitivity of mouse olfactory glomeruli, small structures that receive input from smell receptor neurons, was well described by AI-generated chemical features derived from human perceptual data. Rather than forming a simple map dominated by one or two chemical properties, this organization involved at least three effective chemical-feature dimensions. The spatial pattern was weak and mosaic-like: glomeruli with related sensitivities tended to occur near one another, but their responses overlapped rather than forming sharply separated regions. Our results and methods provide a feature-agnostic framework for studying olfactory coding in the mammalian brain.
Related
- Fine ultrastructural organization of glomerular neuropil in the developing zebrafish olfactory bulb
- Diverse genome organization strategies for polysaccharide utilization in the oceans
- Positive early-life olfactory memory is rooted in the olfactory bulb and triggers large-scale changes beyond the olfactory system
- The role of translocator protein in olfactory mucosa neurogenesis and behavior
- Gene duplication shaped the origin and evolution of the vertebrate olfactory combinatorial code
BibTeX
@article{milicevic2026shapley,
title = {{Shapley fields reveal mosaic chemotopic organization in the mouse Olfactory bulb across diverse chemical feature sets}},
author = {Nikola Milićević and Shawn D. Burton and Matt Wachowiak and Vladimir Itskov},
journal = {PLOS Computational Biology},
year = {2026},
month = nov,
doi = {10.1371/journal.pcbi.1014917},
url = {https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1014917},
note = {CC BY 4.0},
}
RIS
TY - JOUR
TI - Shapley fields reveal mosaic chemotopic organization in the mouse Olfactory bulb across diverse chemical feature sets
AU - Nikola Milićević
AU - Shawn D. Burton
AU - Matt Wachowiak
AU - Vladimir Itskov
PY - 2026
DA - 2026/11/04
JO - PLOS Computational Biology
DO - 10.1371/journal.pcbi.1014917
UR - https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1014917
AB - Neural representations in the olfactory bulb (OB) remain poorly understood compared to well-established coding principles in other sensory systems. This difficulty arises because a natural coordinate system for olfactory stimulus space has not yet been identified, complicating the characterization of neural receptive fields analogous to those in other sensory modalities. Moreover, the extent to which these tuning properties are spatially organized within the OB remains unclear. To advance our understanding of the olfactory coding, we introduce an interpretable method of Shapley fields, as an olfactory analog of retinotopic receptive fields. Shapley fields are spatial distributions of chemical feature importance for the tuning of OB glomeruli. We used this tool to investigate chemotopy in the OB with diverse sets of chemical features using widefield epifluorescence recordings of the mouse dorsal OB in response to stimuli across a wide range of the chemical space. We found that Shapley fields reveal a weak chemotopic organization of the chemical feature sensitivity of dorsal OB glomeruli. This organization was consistent across animals and mostly agreed across very different chemical feature sets: (i) the expert-curated PubChem database features and (ii) features derived from a Graph Neural Network trained on human olfactory perceptual tasks. This chemotopy involved at least three chemical feature dimensions, rather than one or two dominant properties. Moreover, we found that the principal components of the Shapley fields corresponded to single commonly accepted chemical classification groups. This implies that these chemical groups could have been identified purely from the mouse olfactory responses. Our findings suggest that Shapley fields may serve as a chemical feature-agnostic method for investigating olfactory perception. Author summary: The sense of smell remains poorly understood compared with other sensory systems in the mammalian brain. This is because there is little understanding of how specific chemical features drive olfactory perception and how these features are spatially organized within the olfactory bulb. We introduce a novel method for understanding the coding properties of olfactory processing in the mammalian brain. Using neural activity in the mouse olfactory bulb, we characterized the non-random organization of chemical sensitivity across the surface of the olfactory bulb. We also found that the chemical sensitivity of mouse olfactory glomeruli, small structures that receive input from smell receptor neurons, was well described by AI-generated chemical features derived from human perceptual data. Rather than forming a simple map dominated by one or two chemical properties, this organization involved at least three effective chemical-feature dimensions. The spatial pattern was weak and mosaic-like: glomeruli with related sensitivities tended to occur near one another, but their responses overlapped rather than forming sharply separated regions. Our results and methods provide a feature-agnostic framework for studying olfactory coding in the mammalian brain.
SN - 1553-7358
ER -