A call for sharing phenotypic antimicrobial susceptibility data alongside bacterial genome sequence data in public archives

@article{holt2026call,
  title = {{A call for sharing phenotypic antimicrobial susceptibility data alongside bacterial genome sequence data in public archives}},
  author = {Kathryn Elizabeth Holt and Matthijs Simeon Berends and Leonid Chindelevitch and Natacha Couto and Donald Brody Duncan and Zoe Anne Dyson and Ebenezer Foster-Nyarko and Jane Hawkey and John Andrew Lees and Finlay Maguire and Arjun Balmiki Prasad and Sarah Louise Baines and Shereen Shaban Abdelkareem and Aduragbemi Sunday Adesina and Dylan Adlard and Silvia Argimón and Célia Bettencourt and Rémy A Bonnin and Emily Bordeleau and Valeria Bortolaia and Rafael Canton and Deepali Sahebrao Desai and Ghislaine Descours and Margo Diricks and Birgitta Duim and Mohammed Elbediwi and Philip W Fowler and Ana R Freitas and João Pedro Rueda Furlan and Migle Gabrielaite and Rahul Garg and Richard Neil Goodman and Theodore Gouliouris and Axel Hamprecht and Paul G Higgins and Bogdan I Iorga and Elita Jauneikaite and Priyanka Khopkar-Kale and Bela Kocsis and Adam S Komorowski and Robert Kozak and Marcela Krůtová and Xena Li and Małgorzata Ligowska-Marzęta and Po-Yu Liu and Bruno Silvester Lopes and Laurence Don Wai Luu and Ramon Maluping and Vera Manageiro and Sheeba Santhini Manoharan-Basil and Andrew G Mcarthur and Martin Patrick Mchugh and Conor J Meehan and Matthias Merker and Tatum D Mortimer and Karyn Murugi Mukiri and Soe Yu Naing and Ângela Novais and Alexandra Nunes and Luis G C Pacheco},
  journal = {npj Antimicrobials and Resistance},
  year = {2026},
  month = oct,
  doi = {10.1038/s44259-026-00278-5},
  url = {https://pasteur.hal.science/pasteur-05800728v1},
  note = {CC BY 4.0},
}

TY  - JOUR
TI  - A call for sharing phenotypic antimicrobial susceptibility data alongside bacterial genome sequence data in public archives
AU  - Kathryn Elizabeth Holt
AU  - Matthijs Simeon Berends
AU  - Leonid Chindelevitch
AU  - Natacha Couto
AU  - Donald Brody Duncan
AU  - Zoe Anne Dyson
AU  - Ebenezer Foster-Nyarko
AU  - Jane Hawkey
AU  - John Andrew Lees
AU  - Finlay Maguire
AU  - Arjun Balmiki Prasad
AU  - Sarah Louise Baines
AU  - Shereen Shaban Abdelkareem
AU  - Aduragbemi Sunday Adesina
AU  - Dylan Adlard
AU  - Silvia Argimón
AU  - Célia Bettencourt
AU  - Rémy A Bonnin
AU  - Emily Bordeleau
AU  - Valeria Bortolaia
AU  - Rafael Canton
AU  - Deepali Sahebrao Desai
AU  - Ghislaine Descours
AU  - Margo Diricks
AU  - Birgitta Duim
AU  - Mohammed Elbediwi
AU  - Philip W Fowler
AU  - Ana R Freitas
AU  - João Pedro Rueda Furlan
AU  - Migle Gabrielaite
AU  - Rahul Garg
AU  - Richard Neil Goodman
AU  - Theodore Gouliouris
AU  - Axel Hamprecht
AU  - Paul G Higgins
AU  - Bogdan I Iorga
AU  - Elita Jauneikaite
AU  - Priyanka Khopkar-Kale
AU  - Bela Kocsis
AU  - Adam S Komorowski
AU  - Robert Kozak
AU  - Marcela Krůtová
AU  - Xena Li
AU  - Małgorzata Ligowska-Marzęta
AU  - Po-Yu Liu
AU  - Bruno Silvester Lopes
AU  - Laurence Don Wai Luu
AU  - Ramon Maluping
AU  - Vera Manageiro
AU  - Sheeba Santhini Manoharan-Basil
AU  - Andrew G Mcarthur
AU  - Martin Patrick Mchugh
AU  - Conor J Meehan
AU  - Matthias Merker
AU  - Tatum D Mortimer
AU  - Karyn Murugi Mukiri
AU  - Soe Yu Naing
AU  - Ângela Novais
AU  - Alexandra Nunes
AU  - Luis G C Pacheco
PY  - 2026
DA  - 2026/10/13
JO  - npj Antimicrobials and Resistance
DO  - 10.1038/s44259-026-00278-5
UR  - https://pasteur.hal.science/pasteur-05800728v1
AB  - Genomics is widely used in the surveillance and investigation of antimicrobial resistance (AMR), with standard practice to deposit bacterial whole-genome sequence data in public archives to support research and public health. Here, we call for open sharing of matched phenotypic antimicrobial susceptibility data alongside sequence data to support equitable data-driven development and validation of new technologies to address AMR, and highlight key principles and resources to facilitate such sharing.
SN  - 2731-8745
ER  -