Microbial niche partitioning explains N₂O distributions and cycling in marine oxygen minimum zones.
- 1Biosphere Sciences and Engineering, Carnegie Institution for Science, Pasadena, CA 91125.
- 2Department of Biology, University of Pennsylvania, Philadelphia, PA 19104.
- 3Environment, Commonwealth Scientific and Industrial Research Organisations, Hobart, TAS 7004, Australia.
Abstract
Oxygen minimum zones (OMZs) are marine hotspots for cycling and emission of the powerful greenhouse gas nitrous oxide (N₂O). Steep redox gradients host diverse microbial communities that produce and consume N₂O, generating a characteristic vertical distribution, with low concentrations in anoxic cores and supersaturated accumulation in surrounding oxyclines. Although the accumulation is commonly attributed to stronger O₂ inhibition of N₂O consumption than production, this differential inhibition is not consistently observed, suggesting that interactions among nitrogen-cycling metabolisms may provide additional mechanisms. To evaluate the ecological controls on the N₂O profile, we embed a trait-based ecosystem model into an eddy-resolving simulation of the Eastern Tropical South Pacific OMZ. In this framework, redox energetics, metabolite exchange, competition, and grazing structure microbial growth, setting emergent niches of microbial functional types, particularly aerobic ammonia oxidizers and diverse anaerobic denitrifiers that mediate N₂O cycling. In the anoxic core, cross-feeding tightly couples denitrifiers that produce and consume N₂O, maintaining low concentrations. As O₂ increases in the oxycline, competition with aerobic metabolisms and intensified grazing gradually exclude denitrifiers. However, because they draw on more abundant substrates, N₂O-producing denitrifiers persist to higher O₂ than N₂O consumers, reflecting the vulnerability of populations dependent on intermediate metabolites. This ecological decoupling drives N₂O accumulation and captures the characteristic double-peaked vertical structure without imposing physiological O₂ intolerance thresholds. More broadly, by revealing how niche partitioning and producer-consumer coupling shape other features of OMZ biogeochemistry, these results provide a basis for projecting future shifts in marine nitrogen loss and N₂O emissions.
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BibTeX
@article{mccoy2026microbial,
title = {{Microbial niche partitioning explains N₂O distributions and cycling in marine oxygen minimum zones.}},
author = {Daniel McCoy and Xin Sun and Pearse J Buchanan and Emily J Zakem},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
year = {2026},
month = oct,
doi = {10.1073/pnas.2612813123},
url = {https://europepmc.org/article/MED/42879486},
note = {CC BY-NC-ND},
}
RIS
TY - JOUR
TI - Microbial niche partitioning explains N₂O distributions and cycling in marine oxygen minimum zones.
AU - Daniel McCoy
AU - Xin Sun
AU - Pearse J Buchanan
AU - Emily J Zakem
PY - 2026
DA - 2026/10/15
JO - Proceedings of the National Academy of Sciences of the United States of America
DO - 10.1073/pnas.2612813123
UR - https://europepmc.org/article/MED/42879486
AB - Oxygen minimum zones (OMZs) are marine hotspots for cycling and emission of the powerful greenhouse gas nitrous oxide (N₂O). Steep redox gradients host diverse microbial communities that produce and consume N₂O, generating a characteristic vertical distribution, with low concentrations in anoxic cores and supersaturated accumulation in surrounding oxyclines. Although the accumulation is commonly attributed to stronger O₂ inhibition of N₂O consumption than production, this differential inhibition is not consistently observed, suggesting that interactions among nitrogen-cycling metabolisms may provide additional mechanisms. To evaluate the ecological controls on the N₂O profile, we embed a trait-based ecosystem model into an eddy-resolving simulation of the Eastern Tropical South Pacific OMZ. In this framework, redox energetics, metabolite exchange, competition, and grazing structure microbial growth, setting emergent niches of microbial functional types, particularly aerobic ammonia oxidizers and diverse anaerobic denitrifiers that mediate N₂O cycling. In the anoxic core, cross-feeding tightly couples denitrifiers that produce and consume N₂O, maintaining low concentrations. As O₂ increases in the oxycline, competition with aerobic metabolisms and intensified grazing gradually exclude denitrifiers. However, because they draw on more abundant substrates, N₂O-producing denitrifiers persist to higher O₂ than N₂O consumers, reflecting the vulnerability of populations dependent on intermediate metabolites. This ecological decoupling drives N₂O accumulation and captures the characteristic double-peaked vertical structure without imposing physiological O₂ intolerance thresholds. More broadly, by revealing how niche partitioning and producer-consumer coupling shape other features of OMZ biogeochemistry, these results provide a basis for projecting future shifts in marine nitrogen loss and N₂O emissions.
SN - 0027-8424
SN - 1091-6490
ER -