HY5 orchestrates the transcriptional network controlling coumarin-mediated iron acquisition under elevated pH conditions
Abstract
Iron (Fe) bioavailability is strongly limited in alkaline soils, where reduced Fe solubility severely restricts plant growth and productivity. To overcome this, Arabidopsis thaliana promotes Fe acquisition by secreting Fe-mobilizing coumarins, however, the transcriptional mechanisms coordinating this response is not clearly understood. Here we identify the ELONGATED HYPOCOTYL 5 (HY5), a bZIP transcription factor as a master regulator of coumarin mediated Fe acquisition under alkaline conditions. HY5 positively regulates genes required for coumarin biosynthesis, activation, secretion, and transcriptional control, and loss of HY5 markedly reduces their expression during high-pH-induced Fe deficiency. Chromatin immunoprecipitation analyses revealed that HY5 directly associates with the promoters of these genes, thereby establishing a transcriptional regulatory network that coordinates coumarin biosynthesis. Consistent with this regulatory function, hy5 mutants exhibit reduced coumarin accumulation, impaired root growth, chlorosis, and decreased Fe accumulation under alkaline conditions. Comparable phenotypes in coumarin-hy5 double mutants, together with the restoration of growth by exogenous fraxetin, demonstrate that HY5 functions upstream of coumarin-mediated Fe mobilization. Collectively, our findings identify HY5 as a molecular hub that integrates environmental pH signals with coumarin biosynthesis to promote adaptive Fe acquisition under alkaline conditions, providing a framework for improving crop performance on calcareous soils.
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BibTeX
@misc{koolath2026orchestrates,
title = {{HY5 orchestrates the transcriptional network controlling coumarin-mediated iron acquisition under elevated pH conditions}},
author = {Varsha Koolath and Muskan Kalra and Meijie Li and Samriti Mankotia and Anurag Kumar and Shunsuke Watanabe and Christian Dubos and Santosh B Satbhai},
howpublished = {HAL},
year = {2026},
month = sep,
doi = {10.64898/2026.09.16.752116},
url = {https://hal.inrae.fr/hal-05758279v1},
note = {CC BY-NC-ND 4.0},
}
RIS
TY - UNPB
TI - HY5 orchestrates the transcriptional network controlling coumarin-mediated iron acquisition under elevated pH conditions
AU - Varsha Koolath
AU - Muskan Kalra
AU - Meijie Li
AU - Samriti Mankotia
AU - Anurag Kumar
AU - Shunsuke Watanabe
AU - Christian Dubos
AU - Santosh B Satbhai
PY - 2026
DA - 2026/09/16
PB - HAL
DO - 10.64898/2026.09.16.752116
UR - https://hal.inrae.fr/hal-05758279v1
AB - Iron (Fe) bioavailability is strongly limited in alkaline soils, where reduced Fe solubility severely restricts plant growth and productivity. To overcome this, Arabidopsis thaliana promotes Fe acquisition by secreting Fe-mobilizing coumarins, however, the transcriptional mechanisms coordinating this response is not clearly understood. Here we identify the ELONGATED HYPOCOTYL 5 (HY5), a bZIP transcription factor as a master regulator of coumarin mediated Fe acquisition under alkaline conditions. HY5 positively regulates genes required for coumarin biosynthesis, activation, secretion, and transcriptional control, and loss of HY5 markedly reduces their expression during high-pH-induced Fe deficiency. Chromatin immunoprecipitation analyses revealed that HY5 directly associates with the promoters of these genes, thereby establishing a transcriptional regulatory network that coordinates coumarin biosynthesis. Consistent with this regulatory function, hy5 mutants exhibit reduced coumarin accumulation, impaired root growth, chlorosis, and decreased Fe accumulation under alkaline conditions. Comparable phenotypes in coumarin-hy5 double mutants, together with the restoration of growth by exogenous fraxetin, demonstrate that HY5 functions upstream of coumarin-mediated Fe mobilization. Collectively, our findings identify HY5 as a molecular hub that integrates environmental pH signals with coumarin biosynthesis to promote adaptive Fe acquisition under alkaline conditions, providing a framework for improving crop performance on calcareous soils.
ER -