A Multilayer Human Skin Diseasome Links Molecular Architecture, Clinical Co-occurrence, and Drug-Reversal Signatures
- 1University of Cincinnati
Abstract
Background Immune-mediated skin diseases frequently co-occur, but the molecular architecture connecting clinically distinct disorders, and the extent to which molecular proximity predicts shared therapeutic opportunity, remain incompletely defined. We constructed a multilayer skin diseasome integrating transcriptomic overlap, pathway enrichment, protein-interactome topology, curated disease associations, real-world clinical co-occurrence, and drug-perturbation signatures across psoriasis (PS), atopic dermatitis (AD), hidradenitis suppurativa (HS), vitiligo (VL), and chronic spontaneous urticaria (CSU), using sodium lauryl sulfate-induced irritant contact dermatitis (SLS-ICD) as a mechanistically distinct barrier-injury comparator. Methods Differentially expressed genes (DEGs) were derived from publicly available NCBI Gene Expression Omnibus datasets and compared using exclusive pairwise and higher-order intersections. Gene Ontology biological-process enrichment characterized shared and condition-specific programs. Interactome-based network separation (S_AB) quantified the relative topological proximity of disease modules. DisGeNET enrichment generated candidate disease +associations, a selected subset of which was examined descriptively for patient co-occurrence in TriNetX. Candidate compounds were ranked by reversal of disease-associated expression signatures against LINCS L1000 perturbation profiles. Results The largest exclusive DEG intersection occurred between PS and HS (2,060 genes), followed by AD-PS-HS (490), VL-PS (464), AD-PS (402), and VL-PS-HS (379). Fourteen genes were shared across PS, AD, HS, VL, and CSU but not SLS-ICD. Neutrophil-associated processes recurred across the immune-mediated conditions, whereas SLS-ICD was dominated by keratinization and epidermal-differentiation programs. PS and HS had the lowest observed network-separation value (S_AB = −0.594); SLS-ICD had positive S_AB values in all five comparisons, although this separation did not persist once module sizes were harmonized. DisGeNET linked the index conditions to diverse immune, cardiovascular, neurologic, and neoplastic categories; 42 of these candidate diseases were observed to co-occur with an index condition in the queried TriNetX cohorts. Drug-signature overlap was greatest between PS and CSU, despite their marginal interactome separation, indicating that interactome proximity and predicted pharmacologic reversal capture different dimensions of disease relatedness. mTOR/PI3K-pathway inhibitors were prominent among the psoriasis reversal candidates, while methotrexate and mycophenolate mofetil emerged from both the CSU signature and the curated gene set associated with HIV infection. Conclusion Multilayer integration identified a connected molecular core among five immune-mediated skin diseases and a distinct SLS-ICD injury module. The discordance between interactome proximity and drug-signature overlap suggests that no single layer adequately defines disease relatedness. These findings provide a hypothesis-generating framework for prioritizing disease links and repurposing candidates, but controlled epidemiologic analyses and experimental validation are required before clinical or therapeutic inference.
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BibTeX
@misc{karim2026multilayer,
title = {{A Multilayer Human Skin Diseasome Links Molecular Architecture, Clinical Co-occurrence, and Drug-Reversal Signatures}},
author = {R. Karim and D. Ghosh},
howpublished = {bioRxiv},
year = {2026},
month = oct,
doi = {10.64898/2026.10.07.756451},
url = {https://www.biorxiv.org/content/10.64898/2026.10.07.756451v1},
note = {Public domain},
}
RIS
TY - UNPB
TI - A Multilayer Human Skin Diseasome Links Molecular Architecture, Clinical Co-occurrence, and Drug-Reversal Signatures
AU - R. Karim
AU - D. Ghosh
PY - 2026
DA - 2026/10/07
PB - bioRxiv
DO - 10.64898/2026.10.07.756451
UR - https://www.biorxiv.org/content/10.64898/2026.10.07.756451v1
AB - Background Immune-mediated skin diseases frequently co-occur, but the molecular architecture connecting clinically distinct disorders, and the extent to which molecular proximity predicts shared therapeutic opportunity, remain incompletely defined. We constructed a multilayer skin diseasome integrating transcriptomic overlap, pathway enrichment, protein-interactome topology, curated disease associations, real-world clinical co-occurrence, and drug-perturbation signatures across psoriasis (PS), atopic dermatitis (AD), hidradenitis suppurativa (HS), vitiligo (VL), and chronic spontaneous urticaria (CSU), using sodium lauryl sulfate-induced irritant contact dermatitis (SLS-ICD) as a mechanistically distinct barrier-injury comparator. Methods Differentially expressed genes (DEGs) were derived from publicly available NCBI Gene Expression Omnibus datasets and compared using exclusive pairwise and higher-order intersections. Gene Ontology biological-process enrichment characterized shared and condition-specific programs. Interactome-based network separation (S_AB) quantified the relative topological proximity of disease modules. DisGeNET enrichment generated candidate disease +associations, a selected subset of which was examined descriptively for patient co-occurrence in TriNetX. Candidate compounds were ranked by reversal of disease-associated expression signatures against LINCS L1000 perturbation profiles. Results The largest exclusive DEG intersection occurred between PS and HS (2,060 genes), followed by AD-PS-HS (490), VL-PS (464), AD-PS (402), and VL-PS-HS (379). Fourteen genes were shared across PS, AD, HS, VL, and CSU but not SLS-ICD. Neutrophil-associated processes recurred across the immune-mediated conditions, whereas SLS-ICD was dominated by keratinization and epidermal-differentiation programs. PS and HS had the lowest observed network-separation value (S_AB = −0.594); SLS-ICD had positive S_AB values in all five comparisons, although this separation did not persist once module sizes were harmonized. DisGeNET linked the index conditions to diverse immune, cardiovascular, neurologic, and neoplastic categories; 42 of these candidate diseases were observed to co-occur with an index condition in the queried TriNetX cohorts. Drug-signature overlap was greatest between PS and CSU, despite their marginal interactome separation, indicating that interactome proximity and predicted pharmacologic reversal capture different dimensions of disease relatedness. mTOR/PI3K-pathway inhibitors were prominent among the psoriasis reversal candidates, while methotrexate and mycophenolate mofetil emerged from both the CSU signature and the curated gene set associated with HIV infection. Conclusion Multilayer integration identified a connected molecular core among five immune-mediated skin diseases and a distinct SLS-ICD injury module. The discordance between interactome proximity and drug-signature overlap suggests that no single layer adequately defines disease relatedness. These findings provide a hypothesis-generating framework for prioritizing disease links and repurposing candidates, but controlled epidemiologic analyses and experimental validation are required before clinical or therapeutic inference.
ER -