Bioinformatics & computational biology
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- Kontext: Kernel-based method bridging spatial domain identification and cell-cell communication
- A tale of two states: AlphaFold binding pockets on the apo-holo continuum
- PatHoST: weakly supervised reconstruction of pathogen spatial distributions from host transcriptomes
- Task-Dependent Performance of GNNs and Pretrained Models in ADMET Prediction
- flashscenic: Accelerated GRN Analysis with RegDiffusion for Large-Scale Single-Cell Data
- When Does Active Learning Improve ADMET Prediction? A Multi-Endpoint Benchmark
- SYMBIO-SCAN, a full-length 16S rRNA gene-based workflow optimized for bacterial symbiont detection and discovery from long read sequencing
- Predicting Pathway Dependency in Head and Neck Squamous Cell Carcinoma from Hallmark Transcriptomic Features
- Structure, Not Sequence: Tracking and Validating Folding Mechanisms in ESMFold's Trunk with Sparse Autoencoders
- Multimodal Knowledge Aggregation for Microbial Keratitis: Geographic Confounding and Shortcut Risk in Pooled Multicountry Data
- Escaping cells dilute CRISPR screen responses unequally across cell types
- Multivariate Augmented Prediction-Powered Survival Inference for EHR Association Studies With Limited Chart Review
- Shared clones make random cell halves look reproducible in pooled screens
- ECG-RSI: Recursive Self-Improvement through Targeted Electrocardiogram Waveform Evolution
- MedEvo: Medical Reasoning Evolution through Knowledge Navigation
- Genotypic Triggers: Exposing Pharmacogenomic Blind Spots via Host-Specific Backdoors in Generative Antimicrobial Peptide Models
- Interpreting Graph Neural Networks for Antibacterial Drug Repurposing against Acinetobacter baumannii
- Transcriptomic similarity guides source selection beyond tissue lineage
- Single-Nucleus Profiling Reveals Neuronal Metabolic Collapse During the Transition to Alzheimer's Disease Dementia
- Verifiable Agentic Science on Public Infrastructure
- Single-cell RNA-seq of amniotic fluid provides unique insight into fetal development
- Mimic: A Unified Neural Network Architecture for Modelling Genomic Sequences and Module-level Comparison
- RNA-SpecFlow: RNA-Conditioned Spectral Flow for Histology Synthesis
- Xenograft supervision and joint methylation-fragment-end encoding define a reusable molecular scoring layer for cell-free tumor DNA
- BLOOM: Biologically Informed Flow Matching for Transcriptomic Virtual Embryo Modeling