Bioinformatics & computational biology
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- What Language Adds, and at What Cost: Four Controlled Probes of Pathology Vision-Language Models
- Bombadil: A Foundation Model for Plant Electrophysiology
- PyGPLA: A Python Package for Generalized Phase Locking Analysis
- How Robust Are Prognostic Radiomic Features? Comparing Selection Techniques on Pooled Glioblastoma Cohorts
- An Open-Source Web-Based Viewer for Disseminating Image-Derived Models
- DoAtlas-2: A Foundation for Self-Evolving Causal Biomedical Discovery
- Simulation-free approximate Bayesian computation for stochastic reaction networks
- Propensity Straight-Through Gradients for Discrete Stochastic Systems
- DNA methylation reveals molecular heterogeneity and urate excretion-associated subtypes of gout
- A robust mutation spectrum analysis framework for high-depth error-corrected sequencing data
- Sequence-only antigen context improves modeling of antibody hypervariable regions
- Agent K: An Agent-Orchestrated Pipeline for Mapping Genes to Biosynthetic Pathway towards Metabolite Discovery
- biHash: bisulfite-aware recursive nucleotide hashing
- Targeting PRMT5 Across Cancers and AI-Driven Discovery of Candidate Compounds
- Haplotype-based fine-mapping of variant associations for complex traits
- corrdeconv corrects deconvolution's misreading of disease cell states as abundance, overturning benchmarks and outperforming every published deconvolution method
- BUDDY: An interactive web platform to accelerate the functional modeling of human missense variants using Saccharomyces cerevisiae orthologs
- Astrolabe: Programmable all-atom biomolecular design through cross-context coordination and structural intervention
- Information contracts determine what inverse perturbation benchmarks measure
- Widespread Recruitment of ParA-like NTPases into Prokaryotic Immunity reveals a diversity of anti-selfish element strategies
- Pose: a pure-NumPy, chirality-aware, structural engine for building and manipulating the molecular structures of proteins, nucleic acids, and small organic molecules
- Reinforcement learning with evolutionary priors unlocks multi-site enzyme optimization from sparse experimental feedback
- An immune world model with multi-agent orchestration for peptide vaccines
- Contextual Biomedical Language Models for Imbalance-Aware Drug-Food Interaction Classification
- Direct RNA sequencing of beet yellows virus replicative intermediates reveals diverse deletion containing RNAs and break point patterns