Bioinformatics & computational biology
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- hvantk: an agentic multi-omics framework for variant annotation and analysis
- The impact of strain heterogeneity on genomic profiling accuracy in mixed-strain Escherichia coli metagenomes
- Proteome scale drug prioritization from AlphaFold 3 interaction confidence
- Variable sparsity non-negative matrix and tensor factorization algorithms and their applications in cancer genomics
- FMCerNet: frequency-aware multi-label learning for fine-grained cervical cytology screening
- Label-Space Mismatch Distorts Cross-Cohort Evaluation in Breast Cancer Molecular Subtyping
- Double-Take: Improving Capacity, Binding, and Selectivity In Long-Context Within Bidirectional Memory
- WILSON - Multi-magnification composites as a foundation for patient-level pathology analysis and diagnostic text generation
- Spontaneous brain-wide rotational dynamics constrain cue-evoked behavior
- Mathematical genomics of SRY proteins and their associated HMG-Box domains across mammals
- Streamline CNV - A Handy Nextflow Pipeline for Chromosomal Copy Number Variation Analysis
- Cuticulome.org: a centralized database of proteins in arthropod cuticles
- Towards a Unified Framework for Protein Interaction Site Prediction Using Hierarchical Protein Representations
- Decoding Cell-level Circadian Phase and Rhythm-state Remodeling in Single-cell Transcriptomes With scRhythmBayes
- An Interpretable Machine Learning Framework for Early- versus Late-Stage Classification of Breast Cancer from Gene Expression, with Co-expression Network Analysis
- G-ALN: a GPU-accelerated BWA-aln algorithm for palaeogenomics
- BiHC: Protein domain segmentation by bidirectional hierarchical clustering using Voronoi tessellation and physical self-containment
- Mechanistic Insights into Adaptive Binding of Vitamins and Hormones at Hotspot-Enriched Interfaces of the Synaptotagmin 1 C2AB Domain
- GOLDEN: Gene expression and allele-informed decomposition for genetic heterogeneity in spatial transcriptomic data
- Medians at the corners, anti-medians at the center: the geometry of breakpoint medians for random signed multichromosomal genomes
- DCSMAP: A Hybrid Linear-Pangenome Framework for Accurate and Efficient Read Alignment
- Strain resolution and wide relative abundance quantification of bacterial microbiomes with nanopore sequencing of the ribosomal RNA operon
- The accessible human surfaceome
- N-Zinclopedia: A database of predicted transition metal-binding sites and metalloenzymes
- PigGPA: A Domain-Constrained Agent for Porcine Genomic Breeding with Verifiable Tool Execution