Bioinformatics & computational biology
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- U-Chrom: a unified framework for single-cell and spatial 3D genome data
- Enhancement of gut-microbiome-based classification of prodromal Parkinson's Disease cases by hyperparameter tuning, integration of multimodal data, and meta-analysis.
- WispLab: open-source browser workbenches for laboratory image and qPCR analysis with reference-based verification
- Aptamers as a sandbox for lab-in-the-loop agentic molecular discovery
- CADS: Measuring the Incremental Contribution of LLM Proposers in Sequential Biological Screens
- Do Vision CIL Methods Transfer to Protein? A Diagnostic Benchmark of Frozen Protein Encoders
- EG-BINN: Parameter-Efficient Ensembling of Gated Biologically Informed Neural Networks for Epigenetic Age Estimation
- Active Learning framework for Antibody Binding Affinity Prediction
- TACTIC: hybrid denoising and clustering for robust 16S amplicon diversity estimates
- Computational Profiling and Pathogenicity Assessment of VHL Missense Mutations
- PeakLocus: A transcript-aware toolkit for RNA-Centric Genomic Annotation
- Robust geometric drift correction and identity reconstruction for biological 3D time-lapse point clouds
- LineageFlow: Growth-Corrected State Dynamics for Probabilistic Cell-Fate Prediction
- Spatial proteomic profiling of cardiac stromal populations and microenvironments in systemic sclerosis-associated primary myocardial involvement
- Beyond Segmentation Accuracy: Evaluating Biological Fidelity in Spatial Pathology
- Network organization of protein binding-site landscapes across scales
- StainAI-Web: An Interactive Platform for Whole-Slide Microglial Morphology Analysis
- VIGAT: VLM-guided gene activity quantification from single-cell ATAC-seq
- Indirect Influences of Artificial Intelligence Advice on Complex Sepsis Treatment Decisions
- ProtoGTX: Prototype-Aligned Graph Transformer for Explainable Whole-Slide Image Analysis
- Establishing the Minimal Clinically Important Difference (MCID) for Smartphone-Derived Gait Measures in Multiple Sclerosis
- Shape-Constrained Bayesian Active Learning of Self-Limiting Saturation Curves
- Image Moment Estimation for Crowded Datasets
- MultiPASE: Shape-Aware Comparative 3D Genome Analysis
- GeoSinkhorn Flow: Geometry-Aware Flow Matching for Perturbation-Conditioned Dynamics in Single cell Data Phenoscapes