Bioinformatics & computational biology
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- From Simulated Fluids to Living Tissue: Zero-Shot Foundation Model Transfer to Perturbed Embryos
- CCTP-Atlas: Compartment-Resolved Ciliary Transcriptional Dysregulation in Tetralogy of Fallot, A Six-Dataset Integrative Meta-Analysis
- MedMCP: An Open Agentic Ecosystem for Medical Imaging Workflows
- Auditing Confidence-Calibrated Benchmarking of Single-Cell Perturbation Models
- Latent-Factor Stability Is Not Sufficient: Evaluating SABLE-MO in Simulated and Cancer Multi-Omics Data
- Hierarchical distribution matching enables comprehensive characterization of common and condition-specific cell niches in spatial omics data
- An integrated database of ion channels
- DIMPLE: A Tree-Guided Divide-and-Conquer Framework for ILS-Aware Phylogenetic Network Inference on Large-Scale Data
- Relation-Aware Graph-Hypergraph Networks for Antibody Sequence-Structure Co-Design
- Determinants of cysteine coverage by chemoproteomics
- CAPO: Compute-Aware Automated Protein-Model Optimization
- Pan-cancer nucleosome landscapes reveal tumor heterogeneity and inform cell-free DNA-based detection
- RiboGRAM learns multi-scale non-coding RNA grammar for structural and regulatory inference
- Evaluating Nanopore read trimming and quality filtering in bacterial genomics
- VesperFlow: An automated pipeline for decoding multisensor data from biologging tags
- Reciprocal effective conductance-based inference of protein-protein relationships delineates protein network hubs and macromolecular properties
- Towards Robust Automated Mouse Scratching Behavior Detection for Itch Research
- Imputing relative abundances via Gaussian random fields
- BioMod: Biological Module Tokenization for Single-Cell Foundation Modeling
- Horizontal transfers can reveal ghost birth events and complete species trees
- Benchmarking single-cell foundation models reveals an advantage in the low-data regime for cell-type and disease-state prediction
- Polypharmacological target-aware molecule generation
- A stochastic model of compartmentalized intracellular signalling
- The SChISM study: Circulating cell-free DNA size profiles as predictors of progression in advanced carcinoma treated with immune-checkpoint inhibitors
- Differential effect of supercoiling on bacterial transcription in topological domains