Bioinformatics & computational biology
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- OFC-SV: Interpreting structural variants in African and Asian cohorts with non-syndromic orofacial clefts
- LongVerse: verified AI agents for Nanopore and PacBio DNA methylation analysis
- CROSS-PLATFORM CONCORDANCE ANALYSIS REVEALS ROBUST AND CLINICALLY RELEVANT GENE SIGNATURES IN BREAST CANCER
- MIEN: a deep-learning model for pocket-conditioned glycan pose and conformation discrimination
- Metabolite-centric Knowledge Graph Unveils Predictive and Mechanistic Insights through Self-supervised Multimodal Learning
- scOmnom: scalable end-to-end single-cell RNA-seq analysis with auditable resolution selection
- mixKIN: An ancestry-aware kinship estimation method for low coverage genomes
- ClonoDeconv: reference-based α - β paired recurrent clonotype proportion estimation from bulk-TCR sequencing
- Trust, but Verify: Epistemic Uncertainty-Gated Pseudo-Labeling for Safer Semi-Supervised Malaria Screening
- DCAF: Unifying Data Validity, Evaluation Validity and Predictive Modeling for Single-cell Perturbation Simulation
- Metalink: Joint taxonomic and functional profiling of metagenomes and metatranscriptomes across resolution scales
- DeepD enables efficient genome modeling and controllable long-context sequence generation across domains of life
- Order Matters: Ambient RNA correction confounds doublet detection in single-cell RNA sequencing
- Warmth shifts rather than speeds transcriptomic ageing in the malaria mosquito Anopheles gambiae
- SpectroBird: Event-Level Vocalization Detection and Curation for Avian Ecology
- Hidden introns and repeated gains shape the heavily interrupted tRNA genes of Asgard archaea
- Biological and technical spatial variation in spatial transcriptomics
- Why 627 BindCraft2 trajectories produced zero binders
- BCell-Epitope-Prediction: A local, reproducible pipeline for multi-epitope vaccine design: integration and structural validation against a panel of PDB antigen-antibody complexes
- Hubness and local scaling in paired T cell receptor distance spaces
- Representation-aware conformal prediction for reliable uncertainty quantification in drug-target affinity
- Data-Driven Virus Discovery with Virushunter and Virusgatherer
- Physiology-Informed Sparse Identification of Dynamic Crop Models
- Probability generating functions for epidemiological time series
- AutoNovo: Agentic Program Search Discovers Transferable Nucleic Acid Design Algorithms