Bioinformatics & computational biology
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- DeepForestVisionV2: Ecology-Driven Taxonomy Expansion for Camera-Trap Monitoring in African Tropical Forests
- Sex-specific differences in ADAR editing patterns in response to SARS-CoV-2 infections
- EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes
- BactMentha: a database of annotated bacteria-host protein interactions
- NetSyn: prokaryotic genomic context exploration of protein families
- Repurposing PeTriBERT for Protein Protein Interaction Prediction with Sequence Structure Fusion
- Invariant reproduction as a fixed-point phenomenon
- RBApy: Extending resource allocation modeling to eukaryotes in complex environments
- Genome wide identification and analysis of inositol tetrakisphosphate kinase (ITPK) gene family in Triticum aestivum L.
- tRNAZAP: Deep learning toolkit for nanopore tRNA signal analysis
- KENT: Fast Pathogen Screening with NVIDIA Jetson Cluster in Resource-Constrained Areas
- FilAdh: degradation-aware analysis of focal adhesions and actin stress fibers
- FlyAnatoView: Visualization of Drosophila Single-cell RNA-seq Datasets on Anatomographs
- A strategy for ionic current analysis of nanopore protein readouts
- RASTRO: Branching Point Decision-Making in Unitig Graphs
- Recomb-Mix Cloud: a cost-efficient and scalable cloud-friendly pipeline for local ancestry inference
- AntiCapt: Fine-Tuned Nucleotide Language Models for Predicting and Designing Anticancer Aptamers
- Temporal organization of shared brain states characterizes heterogeneity in major depressive disorder
- MtbAIM: AI/ML-guided endpoint-specific prediction of small-molecule activity across drug-susceptible and drug-resistant Mycobacterium tuberculosis
- Characterization of cross-family conserved fragments
- Forensic likelihood ratios for shotgun sequencing data from DNA mixtures
- GRASP: Graph Representation Learning with Assay Supervision for Molecular Properties
- G4SCOPE identifies sequence features and epigenetic contexts of chromatin G-quadruplexes
- MOSAIC: Learning Graph Node Embeddings from Spectrally Isolated Dominant Subspaces of Accumulated Diffusion Operators
- GalaxyMemMD: an end-to-end Galaxy toolset for reproducible membrane embedding, molecular dynamics simulation, and analysis of membrane proteins