Bioinformatics & computational biology
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- Genome-wide landscape of m6A regulatory genes in Marchantia polymorpha: conservation, diversification, and expression dynamics
- Enrich.AI: An Agentic AI Platform for Interactive GeneSet Enrichment Analysis and Biological Interpretation
- sORF-Trans2MS: a two-module deep learning framework for sORF translation and MS-supported microprotein prediction
- YGEP: An Integrated Web Platform for Genomic Evaluation and Intelligent Breeding in Yak
- Validated Semantic Scoring Improves Filtering Generic Concepts from Knowledge-Graphs for Drug Repurposing Queries
- lisaR: An LLM-Inferred Semantic Annotation of biological categories for gene set enrichment analysis
- Circular Data Analysis for Spatial Omics
- Iterative computational bioprospecting of hydroxymethylfurfural oxidases combining molecular simulation and machine learning
- Evaluating in-context learning with prompting regimes for transformer-based synthetic health tabular data generation
- Explainable t-SNE for Single-Cell RNA-seq Data Analysis: A Cell-DrivenInformation Fusion Framework
- DE-SWAN analysis of biomarker trajectories over the life course is highly sensitive to age distribution and model parameterization
- Verification Debt in Automated Biological Research Workflows: A Proof-of-Concept
- methylTFR: Computational quantification of transcription factor activity from DNA methylation
- PowerFit: An updated framework for fast rigid-body fitting into cryo-EM density maps.
- EndoMT: An R Package Resource for Endothelial-Mesenchymal Transition Gene Set Enrichment Analysis
- RetroGEF: Dynamic Graph Edit Flow for Single-Step Retrosynthesis
- Systematic exploration of predicted quaternary structures within pandemic-relevant viral proteomes
- 2-Dimensional spectral gating for denoising bioacoustics recordings
- OmniVCBench: Benchmarking Evidence-Grounded Multimodal Reasoning Towards AI Virtual Cells
- Benchmarking graph-based models for in-silico toxicity prediction in drug discovery
- How 'Foundational' Are Current Molecular Foundation Models?
- AssayRouter: Historical Utility Priors for Frozen Molecular Predictor Routing
- Scalable Diffusion SBI for Compositional Inference under Simulator Misspecification
- Volcanite: Commodity-Hardware Segmentation Volume Visualization for Connectomics and Beyond
- Prediction bias in biological ageing markers