Bioinformatics & computational biology
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- AmbiDose: per-cell removal budgets for ambient RNA contamination
- Autonomic and neurotrophic signaling in alcohol-associated liver disease
- Why rescue-based transcript ranking can mislead: normalization displacement and shared-control coupling in perturbation transcriptomics
- Downstream mRNA Secondary Structure, Not Codon Elongation Supply, Coordinates Co-Translational Protein Folding Across the Human Ribosomal Exit Tunnel
- Auditing Protein-Protein Interaction Signals with Sparse Autoencoder Fingerprints
- GGE: General-purpose deep meta-learning for classification of human transcriptomes with limited data
- GroundAnnot: a closed-vocabulary contract for grounding LLM gene-set annotation in live enrichment backends
- AbRefine: Framework-Conditioned Refinement for Structure-Guided Antibody CDR Design
- Evidence Scaling for Zero-Shot Protein Reasoning with Large Language Models
- KoopCell: Koopman-Based Generative Model for Learning Single-Cell Dynamics from Distribution Snapshots
- Digitally enriching a high-risk population for pancreatic cancer using routine blood-based measures and clinical histories
- PathoBERT: A Hybrid Attention-Based Genomic Language Model for Read-Level Bacterial Pathogenicity Prediction
- Pre-registered spectral and certified mixing analysis of the male Drosophila central nervous system connectome
- Minkowski Tensors as a Lightweight and Interpretable Representation for Three-Dimensional Morphology
- ddkg.skill: A Compositional Agent Skill for Translating Biomedical and Bioinformatics Questions into Cypher for the Data Distillery Knowledge Graph
- EnsPlex: Integrative Protein Complex Prediction through Multi-source Complementary Structural Sampling and Topology-Aware Candidate Selection
- Widespread 3-Base Periodicity in Complex DNA Mixtures and an Alignment-Free Algorithm to Uncover its Source
- In-silico Exploration of Drug Leads Targeting Mycobacterial Ag85C
- QuImputer: an LD-informed QUBO/Ising formulation of genotype imputation with quantum-hardware execution
- IQC: A Novel Criterion for Assessing Feature Selection Stability in High-Dimensional Analyses
- LOL: a Python package for leakage-aware phenotype prediction and confounding diagnostics in GEO transcriptomics datasets
- Ultrafast and Accurate Selection of High-Quality Protein Complex Models from Large-Scale Prediction
- Accurate and scalable demultiplexing of single-cell RNA sequencing using BEACON
- ProteoEM: probabilistic protein abundance estimation from iterative affinity traces
- DCFold: Efficient Protein Structure Generation with Single Forward Pass