Bioinformatics & computational biology
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- VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design
- Structured Population Models for Follicular Development
- Quantifying the Provenance-to-Function Gap in Antidiabetic Peptide Prediction: Homology-Aware Evaluation and the ADP-Hybrid Baseline
- Three-Year Longitudinal Analysis of Splicing Changes in Myotonic Dystrophy Type 1
- Octave: Scale-resolved Evaluation of Spatial Gene Expression Prediction from Histology
- Rank-Preserving Alignment Enables Cross-platform Learning and Phenotyping for Single-Cell and Spatial Proteomics
- Sparse dynamic graphical models for longitudinal non-Gaussian data
- Limitations of differential expression for cell-type marker discovery in single-cell RNA sequencing atlases
- AmyloCore-ML: AI/Machine Learning Enabled Identification of Amyloid Fibril Core Regions Using Protein Language Models
- SFUMATO: Bayesian probabilistic clustering for uncertainty-aware spatialtranscriptomics analysis and mapping
- biomes: An R package for reproducible occurrence-to-biome classification using 31 global biome schemes
- Integrative Multi-Omics Analysis Reveals Molecular Signatures of Age-Related Decline in Vervet Leg Skeletal Muscle
- Rank-based integration identifies convergent disease mechanisms across omics
- HMVA-DDI: A Hierarchical Multi-View Attention Network for Drug-Drug Interaction and Severity Prediction
- Multi-Model Machine Learning Consensus Identifies a Dual-Interferon Gene Signature in Ischemic Stroke: An Integrative Single-Cell Transcriptomic Analysis
- ProxiNet transfers spatially learned cellular proximity to dissociated single-cell transcriptomes
- Nailpolish: Reference-free UMI deduplication and consensus read generation
- Analyzing Genomic Foundation Models for Viral Sequence Identification
- Predicting Mutational Signature Exposures from H&E Whole Slide Images: A Pan-Cancer Feasibility Study
- Where Tabular Foundation Models Falter on Genetic Data: Datasets That Expose and Provide a Path to Address the Gap
- Trustworthy super-resolution reconstruction across spatial omics modalities
- Slow-fast dynamics of the McKean model with stochastic resetting and diffusion
- DSSNA: An Open-Source GROMACS Module for Automated Analysis of Nucleic Acid Secondary and Tertiary Structure in Molecular Dynamics Simulations
- Pop-Corn: Predicting Perturbation Phenotype Effects Across Single-Cell and Spatial Contexts
- Uncertainty-Aware structured decoding for Chinese Braille document transcription