Bioinformatics & computational biology
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- vardictcpp: A C++ reimplementation of VarDict variant caller
- SpaFactor: Lightweight Spatial Context-Aware Gene Program Modeling for Histology-to-Transcriptomics Inference
- Protein Language Models: Learning From Evolution, Designing Beyond It
- Circadian Derived Features for Early Discrimination Across Insomnia Severity Levels: At Least 8 Weeks of Monitoring Are Needed for Clinically Meaningful Assessment
- Penguin data reanalyzed via Computational Taxonomy
- Topological Inference for Organoids
- Discover, Falsify, Revise: Auditing Input-Use Claims from Source Code to Predictive Contribution in Agent-Discovered Cell Models
- BreCol: Benchmarking Classical and Deep-Learning Methods for Microbiome-Based Cancer Detection
- A Parameter-Free Few-Shot Evaluation for Elephant Vocalisation Classification
- A spectral framework for measuring diversity in multiple sequence alignments
- VIJB: a companion of the JBROWSE genome browser for the visually impaired people
- PanVasc Research for AI assisted evidence analysis in panvascular intervention
- Tri-Modality Representation Learning for Molecular Property Prediction
- ProcessNets: Towards an efficient approach for ensemble analysis of biological networks
- When label-free morphology is sufficient for targeted cellular measurements
- vep-rs: high-throughput Rust variant annotation with population-scale concordance to Ensembl VEP
- Luxar: Gaussian splatting for microscopy and scalable interactive web visualisation of multidimensional scientific data
- DS5: An Open-Source Framework for Standardized High-Throughput Drug Screening Data Storage, Analysis, and Drug Prioritization
- YieldLearn: An interpretable machine-learning pipeline for estimating yield-related traits based on physiological indicators
- Non3nExonFinder: transcript-aware identification of shared non-triplet coding exons
- NexuST: A Hierarchical Foundation Model for Spatial Transcriptomics
- BFWalk: backtrack-free network propagation with in-degree normalization
- Perfect 21-nucleotide matches to beneficial fungi are common in canonical antifungal dsRNA targets: an in-silico off-target hazard screen for spray-induced gene silencing
- AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases
- Fitting dynamics is not identifying causal edges: a white-box masked ODE benchmark for trans-omics digital twins of drug action mechanisms