Bioinformatics & computational biology
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- From single-sequence structure prediction to protein fitness landscape through a composable, epistasis-aware mutation atlas
- Parameter identifiability of a neuroendocrine-inflammatory model across experimental designs
- PRAXIS-VirtualCell: A Programmable and Trustworthy Framework for Agentic Virtual Cell Experiments
- Dynamic Generalized Gromov-Wasserstein Optimal Transport
- Mathematical Modelling of Within-Host HIV Dynamics with Cytotoxic Immune Response and Antiretroviral Therapy
- Individual recognition and number prediction for Manx shearwater (Puffinus puffinus) by passive acoustic monitoring
- Inferring organ aging, hallmark of aging and senescence scores from blood and facial photographs
- An FEV-Associated Metastasis-Initiating-Like State Linked to Tumor Cell Plasticity and Immune Niche Remodeling in Prostate Cancer
- The Venification of the Artery: Insights from Single-Cell Transcriptomics of a Porcine Arteriovenous Fistula Model
- SpatialTRACE predicts anatomical axes and regions in spatial transcriptomics and microscopy
- Schistosoma mansoni infection enhances insertion sequence activity in the host gut microbiome
- Complete timing of copy-number amplification histories reveals whole-genome duplication dynamics and coincident oncogene amplification bursts
- Regulon-informed cellular representations reveal task-dependent generalization in drug combination prediction
- DisenTE: Sparse Pattern-Context Modeling for Interpretable Translation-Efficiency Matrix Completion
- Inferential boundaries of age prediction: why prediction does not establish biological age measurement
- Inferring cascade drivers of VEXAS syndrome by a causal machine learning tool CauNagi
- AI-Based Comparison of UniProt annotations and Literature Across Human Kinases
- Coupling of oceanographic state to the dark proteome: a foundation for genome-informed marine productivity modeling
- Cell-Hub Database: a consolidated multi-species ligand-receptor interaction resource for cell-cell communication analysis
- Unified modeling of mutation-induced protein stability responses with OmegaTherm
- Biologically grounded cell profiling across microscopy modalities
- CheckAMG: Accurate Identification of Auxiliary Viral Genes with Genome-Language Models
- AI Models Excel at Orchestration but Falter at Biological Judgment: Findings from an Agentic Gene Annotation Study
- Deciphering Mechanistic Signatures in Drug-Drug Interactions with Dual Topology Graphs
- The phage stress test: a proving ground for genome language models in biological prediction