Bioinformatics & computational biology
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- MMAD-Risk: Multivariate Mixed Survival Analysis for the Prediction of Age-Dependent Disease Risks from Plasma Proteomes
- Integrating structural and biological evidence to rerank ESMFold2 protein-protein interactions
- Modeling Protein Sequence Evolution as an Ornstein-Uhlenbeck Process in a Latent Space
- Sharpness-Aware Minimization (SAM) Improves Classification Accuracy of Bacterial Raman Spectral Data Enabling Portable Diagnostics
- A Transferable Learned Temporal Prior for Transmission Reconstruction and Decision-Relevant Uncertainty in Real Outbreak Labels
- Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories
- Automatic denoising and differentiation based on Savitzky-Golay filtering and Homogeneous Differentiators for attractor reconstruction via differential embedding
- Quantum Probability Current Guided Reduction of Coupling Control Degrees of Freedom for Excitation Transport
- Hepatic transcriptomic landscape of chicken reveals host responses to spotty liver disease
- Mechanistic inhibition of herpes simplex virus-1 UL21 immune-evasion function by natural-product scaffolds: A multi-tier docking, dynamics, and energetic profiling approach
- A Review of Computational Modeling of Cancer Metastasis
- Benchmarking Uncertainty and Improving Risk Ranking in Multi-task Bioactivity Prediction
- A dependency-free, streamable format and cross-language toolkit for scalable LC-MS feature detection: reading only what you need
- GO-Term Enrichment of Proteome-Scale Docking Profiles as a Biological Search-Space Reduction Layer for Protein Target Discovery
- stEDGE enables edge-guided multiscale reconstruction of hierarchical spatial domains and transition interfaces in spatial transcriptomics
- ANIMA: predicting protein-protein interactions across species
- Reaction-aware hypergraph learning of chemical representations with LARK
- PREpiBind: Protein Representation-integrated Epitope--MHC Class II Binding Prediction
- ProtPipe2: Multi-Platform Downstream Proteomics Analysis Tool
- CalFluxTools: An R package for analysis of high-throughput calcium oscillation screening data
- MakeMyFigure: An Interactive Platform for Reproducible Quantitative Data Visualization, Analysis, and Scientific Figure Construction
- ARCHER-LD: Rapid Long-Range Linkage Disequilibrium Calculations at Biobank Scale using GPU Acceleration
- MaSkel and napari-MaSkel: fast morphological skeleton feature extraction from segmentation masks
- Detecting cell segmentation errors using doublet methods
- Discriminating rare disease cases from their controls based on observed and excluded phenotypes