Bioinformatics & computational biology
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- Pitfalls in understanding PhIP-Seq data: technical variability, replicability, and best practices for interpretation
- A transcriptional continuum from clinically normal to lesional skin: Single-cell trajectory analysis of psoriasis
- celltypeEnrich: a consensus-based scRNA-seq cluster annotation tool
- Two Comparators May Be All We Need
- DeepVir: A reproducible workflow for large-scale viral dark matter discovery
- Pretrained gene representations transfer mean expression more broadly than spatial patterns in virtual spatial transcriptomics
- A Unified 3D Generative Model for Synthesizable Structure-Based Drug Design
- RNAbridge: a database of extended and non-canonical helices
- Evolutionary Diversification of Nitric Oxide Signaling Components Across Metazoa: A Comparative Phylogenomic Analysis
- BioPhys-Bridge: A Benchmark for Interdisciplinary Scientific Reasoning in Physics-Grounded Biological Research
- When AI Generates Covariates: Causal Typing and Estimand Drift in Sequential Experiments
- FlowLOT: Linearized Optimal Transport for Flow Cytometry Analysis
- Bracketing Uncertainty in Clustering Under the Manifold Hypothesis
- GIA: Germline-Informed Aging with AlphaGenome Finds Genetically Regulated CpGs
- Information Set Emulation: Causal Certificates for AI Derived EHR Features
- Decoding Extrahepatic Targeting of Lipid Nanoparticles with Interpretable Machine Learning
- On the interpretation of the kinetics of ligand-receptor binding
- Graphlets as structural fingerprints of complex networks
- Development of a 4D Cerebral Microvascular Imaging Platform for Mouse Stroke Model
- GPCR Ligand Bioactivity Prediction with Physics-Informed Dual-State Query Learning
- PyFLI: A Python Library for Simulation, Parameter Estimation, and Benchmarking in Fluorescence Lifetime Imaging
- Assessing Hardy-Weinberg equilibrium in T2T-aligned 1000 genomes project
- Predicting bacterial vaginosis incidence using artificial neural networks
- Diversity at the HYP1 locus in potato cyst nematodes does not result from developmentally-programmed somatic mutations
- Ten quick tips for spatial transcriptomics analysis