Bioinformatics & computational biology
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- Spatial transcriptomics reveals selective vulnerability of cardiac neural crest-derived glial cells in human myocardial infarction
- Serum metabolomics reveals signatures associated with physical resilience trajectories from middle to older age
- POAnoise: A Graph-based Denoising Pipeline for Amplicon Sequencing Data
- Uniformly processed transcriptome-wide alternative splicing profiles for pediatric cancer research
- Correlation-aware discovery of co-occurring mutational signatures in cancer
- Individual-level expression deconvolution and assessment of cross-sample variation
- StressNET: an adaptable deep-learning model for mechanical stress inference in tissues
- Z-Hunt-DP: accelerating thermodynamic Z-DNA prediction with dynamic programming
- Measurement reliability bounds functional benchmarks and relocates where variant effect prediction fails
- Dynamic Pocketome of Trace Amine-Associated Receptors
- Prediction of pH-sensing histidine residues in human cells
- Scaling Network Medicine with LLMs for Combinatorial Drug Repurposing in ER+ Breast Cancer
- SMORE: joint dimension reduction and cell population discovery on single-cell methylome data
- CUBE: Multimodal Representation Learning Reveals Biological Structure Across Histomorphology, Spatial Protein Phenotypes, and Transcriptome-Associated Signals
- Development and evaluation of a core genome multi-locus sequence typing scheme for the Enterobacter cloacae complex
- Learning interpretable kinetic models for biomolecular interaction networks
- BRIDGE-AD reveals Alzheimer's disease effectors through interpretable large-scale omics integration
- Scaling Functional Annotation Across Proteomes, Pangenomes and Metagenomes with Sma3s v3
- Somatic haplotype reconstruction and variant recalibration from tumor-only long-read sequencing
- BGC Atlas v2: biosynthetic gene clusters with taxonomic and environmental context at scale
- QBayMic: Quantum-coupled variational Bayes for clustering and feature selection in low-signal microbiome data
- Comparative Genomics of COBRA-like Genes in Theobroma and Herrania Reveals Structural Conservation and Lineage-Specific Variation
- Optical microelectrode arrays for differential readout of electrical and mechanical signals in cardiac cells
- Knowledge-Enriched Structured EHR Features for 30-Day Hospital Readmission Prediction on MIMIC-IV
- Multiscale modeling of host-pathogen interactions and mucociliary clearance during non-tuberculous mycobacterial pulmonary infection