Bioinformatics & computational biology
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- AVOCODO: An open-source multimodal annotation platform for developmental EEG
- Rclade: automated taxonomic collapsing and geological-timescale annotation of time-calibrated phylogenetic trees in R
- Mural-VISTA: A tool for mural cell-vessel interaction assessment and multiscale single-cell topo-morphological analysis
- The first OpenBind release: An open experimental structure-affinity dataset and benchmark for structure-based AI
- Constructing microbiome co-occurrence networks with confidence: A conditional, nonparametric, inference-based approach
- Efficient Auto-Interpretability of AI Models in Biology
- CIR-DDG: backbone-agnostic residual correction of antibody-antigen affinity changes with explicit cross-chain geometry
- Pruning the Search, Not the Signal: Adaptive-Banding Needleman-Wunsch Sequence Alignment via Protein Language Model Confidence
- SenSASP: A Unified, Multi-Layer Database of Senescence and SASP Genes
- Automatic bioinformatic software named entity recognition from literature
- From Prompt to Provenance: BloClaw, a Capability-Gated AI4S Workstation for Auditable Computational Biology
- Intelligent differential ion mobility spectrometry (iDMS): A deep neural network that predicts optimal space-resolved ion mobility parameters for isomeric monoglycosphingolipids
- The DYNAM-O Toolbox: Characterizing Individualized Neural Signatures in Sleep EEG
- Sphingolipid metabolism-related genes as key regulatory hubs in white smoke inhalation induced lung injury
- PathFold: Predicting the Entire Protein Folding Pathway from Protein Sequence Alone
- Network-based meta-analysis maps stage-dependent molecular programs in MASLD through MASLD-META NETWORK application
- MetaDome 2027: a comprehensively updated resource for aggregating missense variant evidence across homologous human protein domains
- Every Cure Knowledge Graph: A Unified Biomedical Knowledge Graph for Drug Repurposing
- A Correspondence Score for Validating Learned Patient Representations in Clinical Tabular Data
- LRSPAT: A low-rank framework for spatial omics statistics
- Lineage-specific X chromosome inactivation escape and skew underlie sex-biased immune gene dosage and deleterious variant exposure
- scPyviewer: a Python-native interactive viewer from AnnData single-cell data
- Proteome modulation by opposite inotropic drugs in human engineered cardiac tissue revealed by topology-driven cross-modal integration
- CoTRA: an integrated R/Shiny framework for transparent bulk and single-cell RNA-seq analysis
- RECON infers regions of interest from H&E images and reconstructs whole-slide molecular profiles at single-cell resolution