Bioinformatics & computational biology
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- Integrating Spatially Adjusted Protein Summaries for Survival Prediction in Spatial Proteomics
- Is level-1 blob reconstruction under the network multispecies coalescent easy?
- CaliPPer: quantifying, predicting and improving AI model performance for binding prediction
- Re-evaluating the benefit of pretraining scale in cell foundation models
- scMTG reconstructs single-cell temporal dynamics with Markov transition generators
- Towards Generalizable Protein-ligand Co-folding with ACER
- Nucleic acid 3D structure search and alignment with GTalign
- A multimodal foundation model to integrate histology with spatial molecular programs
- Distinct geometries, comparable interfaces: binding modes and thermodynamic implications in conventional and single domain antibodies
- Using Machine Learning to Enhance Hyperparameter Optimization in Pandemic Modeling: Case study of COVID-19 Dynamics in Ghana
- Learning Protein-Protein Interaction Interfaces from Multimodal Representations
- A deep generative decoder predicts microRNA expression from bulk and single-cell mRNA profiles
- Standardized numbering and alignment of the KPC family of β-lactamases
- Characterization of Outer Membrane β-barrel Proteins of Pasteurella multocida for Multi-Epitope Vaccine Design against Human Pasteurellosis
- An agent-built, verified atlas of public spatial transcriptomics shows that breadth across studies drives transfer and reproducibility
- LRP2: A proteogenomics pipeline for long-read informed protein isoform analysis and discovery
- Trustworthy ML/AI for Aging Clocks: Preventing Systematic Prediction Bias in Biological Age Estimation
- Species phylogenetics using intraprotein residue dependence inferred with protein foundation models
- MetworkPy: A Python Package for Graph- and Information-theoretic Investigation of Metabolic Networks
- platpy: A spatial-first framework for multi-layer spatial transcriptomic analysis
- Individual-Specific Gaussian Graphical Models for Heterogeneous Populations with Application to Epigenetic Gene Regulation in Lung Adenocarcinoma
- Targeting Outer Membrane β-barrel Proteins of Burkholderia mallei to design a Multi-epitope Vaccine Against Human Glanders
- Benchmarking normalisation methods for differential binding analysis in CUT&RUN
- Curated neurodegeneration axis signals are sensitive to cell composition and analytic choices: an adversarial re-analysis of a transcriptomic scoring pipeline
- Molecular Characterization of T-Lineage Acute Lymphoblastic Leukemia by an Optimal-Transport Based Multi-Omics Integration Framework