c-FLIP loss links arrest of gene expression to TNFα-dependent antiviral guard immunity
4 affiliations
- 1The Department of Systems Biology, Harvard Medical School, Boston, MA 02115
- 2The Department of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104
- 3Department of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115
- 4The Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104
Abstract
Cells sense infection through dedicated receptors, yet these surveillance pathways are often subverted by pathogen-encoded virulence factors. Guard immunity provides complementary defense by rapidly killing infected cells in response to infection induced stress. However, the symptoms of infection frequently resemble noninfectious stress, raising the question of how they are distinguished. Using quantitative transcriptomics, proteomics, and global translation measurements during viral infections in vitro and in vivo, we show that infection globally suppresses host gene expression and prevents direct antiviral responses. However, the resulting proteostatic stress does not activate guard immunity unless tumor necrosis factor-α (TNFα) is present. We identify the anti-apoptotic protein c-FLIP as a guard for gene expression integrity: its loss sensitizes cells to TNFα, triggering cell death and limiting viral spread. Modeling demonstrates that TNFα and c-FLIP loss function as a biological AND-gate, providing specificity and speed. These findings show how cells integrate internal stress signals with external inflammatory cues to improve the fidelity of death decisions, and how this circuitry may misfire during noninfectious inflammation.
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BibTeX
@article{sonnett2026cflip,
title = {{c-FLIP loss links arrest of gene expression to TNFα-dependent antiviral guard immunity}},
author = {Matthew Sonnett and Sanne Boersma and Madeline E. Ward and Laura C. Van Eyndhoven and Edoardo Centofanti and Max Brambach and Changhong Zhou and David M. Knipe and Arjun Raj and Alon Oyler-Yaniv and Jennifer Oyler-Yaniv},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
year = {2026},
month = oct,
doi = {10.1073/pnas.2600336123},
url = {https://doi.org/10.1073/pnas.2600336123},
note = {CC BY 4.0},
}
RIS
TY - JOUR
TI - c-FLIP loss links arrest of gene expression to TNFα-dependent antiviral guard immunity
AU - Matthew Sonnett
AU - Sanne Boersma
AU - Madeline E. Ward
AU - Laura C. Van Eyndhoven
AU - Edoardo Centofanti
AU - Max Brambach
AU - Changhong Zhou
AU - David M. Knipe
AU - Arjun Raj
AU - Alon Oyler-Yaniv
AU - Jennifer Oyler-Yaniv
PY - 2026
DA - 2026/10/22
JO - Proceedings of the National Academy of Sciences of the United States of America
DO - 10.1073/pnas.2600336123
UR - https://doi.org/10.1073/pnas.2600336123
AB - Cells sense infection through dedicated receptors, yet these surveillance pathways are often subverted by pathogen-encoded virulence factors. Guard immunity provides complementary defense by rapidly killing infected cells in response to infection induced stress. However, the symptoms of infection frequently resemble noninfectious stress, raising the question of how they are distinguished. Using quantitative transcriptomics, proteomics, and global translation measurements during viral infections in vitro and in vivo, we show that infection globally suppresses host gene expression and prevents direct antiviral responses. However, the resulting proteostatic stress does not activate guard immunity unless tumor necrosis factor-α (TNFα) is present. We identify the anti-apoptotic protein c-FLIP as a guard for gene expression integrity: its loss sensitizes cells to TNFα, triggering cell death and limiting viral spread. Modeling demonstrates that TNFα and c-FLIP loss function as a biological AND-gate, providing specificity and speed. These findings show how cells integrate internal stress signals with external inflammatory cues to improve the fidelity of death decisions, and how this circuitry may misfire during noninfectious inflammation.
SN - 0027-8424
SN - 1091-6490
ER -