The histone methyltransferase complex subunit RBBP5 serves as a central epigenetic regulator of proteostasis dynamics
8 affiliations
- 1Aging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
- 2UPMC Genome Center, UPMC, Pittsburgh, Pennsylvania, United States of America.
- 3Pittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
- 4Organ Pathobiology and Therapeutics Institute, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
- 5Department of Pathology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
- 6Division of Endocrinology and Metabolism, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
- 7Center for Metabolism and Mitochondrial Medicine, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
- 8Department of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, United States of America.
Abstract
Proteostasis is essential for cellular health, with its disruption contributing to aging, neurodegeneration, and metabolic disorders. While the upstream proteotoxic stress-sensing and protein-folding mechanisms in the ER and cytosol are well studied, the transcriptional regulation of proteostasis remains incompletely understood, particularly concerning the temporal epigenome dynamics, chromatin landscapes, and co-regulatory networks underlying dynamic proteostasis control. Traditionally, proteotoxic stress responses were viewed as acute reactions to noxious stimuli, but recent evidence shows that many proteostasis genes exhibit ~12-hour ultradian rhythms under physiological conditions, driven by an XBP1s-dependent oscillator independent of the canonical circadian clock and cell cycle. By mapping the chromatin landscape of the murine 12-hour oscillator, we identified RBBP5—an essential subunit of the COMPASS complex responsible for H3K4 trimethylation—as a pivotal epigenetic regulator of proteostasis dynamics. In contrast, histone acetyltransferases and H3K9 acetylation were dispensable for dynamic proteostasis gene expression. RBBP5 is not only indispensable for the 12-hour oscillator but also essential for the transcriptional regulation of diverse proteotoxic stresses response, by coactivating XBP1s and promoting H3K4me3 deposition at the promoters of proteostasis genes. As a result, loss of RBBP5 sensitizes cells to proteotoxic stress in part due to impaired autophagy. Proximity labeling of H3K4me3 further uncovered a dynamic chromatin-associated proteomic architecture, including components of COMPASS, the Integrator complex and SWI/SNF remodelers, that constitutes the transcriptional response to proteotoxic stress. Together, these findings establish RBBP5 as a central regulator of proteostasis dynamics, essential for maintaining cellular resilience.
Proteostasis is essential for cellular health, but the epigenetic mechanisms regulating dynamic proteostasis programs are poorly understood. This study shows that RBBP5, a subunit of the COMPASS histone methyltransferase complex, controls ultradian proteostasis gene expression by promoting H3K4me3 deposition at the promoters of proteostasis genes.
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BibTeX
@article{kubra2026histone,
title = {{The histone methyltransferase complex subunit RBBP5 serves as a central epigenetic regulator of proteostasis dynamics}},
author = {Syeda Kubra and Michelle Sun and William Dion and Yu Bian and Ahmet Catak and Hannah Luong and Haokun Wang and Yinghong Pan and Jia-Jun Liu and Aishwarya Ponna and Lijun Liu and Ian Sipula and Jian-Hua Luo and Michael J Jurczak and Silvia Liu and Bokai Zhu},
journal = {PLOS Biology},
year = {2026},
month = oct,
doi = {10.1371/journal.pbio.3004048},
url = {https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3004048},
note = {CC BY},
}
RIS
TY - JOUR
TI - The histone methyltransferase complex subunit RBBP5 serves as a central epigenetic regulator of proteostasis dynamics
AU - Syeda Kubra
AU - Michelle Sun
AU - William Dion
AU - Yu Bian
AU - Ahmet Catak
AU - Hannah Luong
AU - Haokun Wang
AU - Yinghong Pan
AU - Jia-Jun Liu
AU - Aishwarya Ponna
AU - Lijun Liu
AU - Ian Sipula
AU - Jian-Hua Luo
AU - Michael J Jurczak
AU - Silvia Liu
AU - Bokai Zhu
PY - 2026
DA - 2026/10/08
JO - PLOS Biology
DO - 10.1371/journal.pbio.3004048
UR - https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3004048
AB - Proteostasis is essential for cellular health, with its disruption contributing to aging, neurodegeneration, and metabolic disorders. While the upstream proteotoxic stress-sensing and protein-folding mechanisms in the ER and cytosol are well studied, the transcriptional regulation of proteostasis remains incompletely understood, particularly concerning the temporal epigenome dynamics, chromatin landscapes, and co-regulatory networks underlying dynamic proteostasis control. Traditionally, proteotoxic stress responses were viewed as acute reactions to noxious stimuli, but recent evidence shows that many proteostasis genes exhibit ~12-hour ultradian rhythms under physiological conditions, driven by an XBP1s-dependent oscillator independent of the canonical circadian clock and cell cycle. By mapping the chromatin landscape of the murine 12-hour oscillator, we identified RBBP5—an essential subunit of the COMPASS complex responsible for H3K4 trimethylation—as a pivotal epigenetic regulator of proteostasis dynamics. In contrast, histone acetyltransferases and H3K9 acetylation were dispensable for dynamic proteostasis gene expression. RBBP5 is not only indispensable for the 12-hour oscillator but also essential for the transcriptional regulation of diverse proteotoxic stresses response, by coactivating XBP1s and promoting H3K4me3 deposition at the promoters of proteostasis genes. As a result, loss of RBBP5 sensitizes cells to proteotoxic stress in part due to impaired autophagy. Proximity labeling of H3K4me3 further uncovered a dynamic chromatin-associated proteomic architecture, including components of COMPASS, the Integrator complex and SWI/SNF remodelers, that constitutes the transcriptional response to proteotoxic stress. Together, these findings establish RBBP5 as a central regulator of proteostasis dynamics, essential for maintaining cellular resilience. Proteostasis is essential for cellular health, but the epigenetic mechanisms regulating dynamic proteostasis programs are poorly understood. This study shows that RBBP5, a subunit of the COMPASS histone methyltransferase complex, controls ultradian proteostasis gene expression by promoting H3K4me3 deposition at the promoters of proteostasis genes.
SN - 1545-7885
SN - 1544-9173
ER -