High Quality, Long-Read Genome Assemblies of Two Virulent Field Isolates of Pyricularia oryzae from Portugal
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Abstract
The fungal pathogen Pyricularia oryzae is notorious for causing blast disease in various important cereal crops, including wheat, rice, millet, and oat. Whole-genome-informed data on this pathogen are necessary to better understand the host adaptability of the fungus, including identifying key determinants of infection to enable more precise disease control. Here, we report highly contiguous genome sequences (using long-read PacBio technology) of two isolates from rice paddies in Portugal, M22.7 and T22.2, which exhibit distinctly aggressive symptoms in rice. Both mitochondrial and nuclear sequences were characterised in this study. The resulting nuclear genomes have assembly lengths of 46.4 Mb for M22.7 (198x coverage) and 46.3 Mb for T22.2 (163x coverage), with near-complete BUSCO completeness (98.8%) and a 0% contamination score (EukCC). Phenotypic analyses on infected rice leaves show that both isolates are infectious and virulent in two different rice cultivars. Most notably, M22.7 lacks the avirulence effector genes Avr-Pii, Avr-Pia and Avr-Pik, which are present in T22.2. This announcement represents the first genome resource for natural isolates of P. oryzae from Portugal in over 30 years, filling an important data gap from a major European rice-producing country that produces locally adapted rice varieties under specific agro-environmental conditions (near the Atlantic coast).
Versions
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BibTeX
@misc{rosa2026high,
title = {{High Quality, Long-Read Genome Assemblies of Two Virulent Field Isolates of Pyricularia oryzae from Portugal}},
author = {P. Rosa and J. Bilro and R. S. Ramiro and C. Azevedo},
howpublished = {bioRxiv},
year = {2026},
month = jun,
doi = {10.64898/2026.06.12.731836},
url = {https://www.biorxiv.org/content/10.64898/2026.06.12.731836v2},
note = {CC BY},
}
RIS
TY - UNPB
TI - High Quality, Long-Read Genome Assemblies of Two Virulent Field Isolates of Pyricularia oryzae from Portugal
AU - P. Rosa
AU - J. Bilro
AU - R. S. Ramiro
AU - C. Azevedo
PY - 2026
DA - 2026/06/12
PB - bioRxiv
DO - 10.64898/2026.06.12.731836
UR - https://www.biorxiv.org/content/10.64898/2026.06.12.731836v2
AB - The fungal pathogen Pyricularia oryzae is notorious for causing blast disease in various important cereal crops, including wheat, rice, millet, and oat. Whole-genome-informed data on this pathogen are necessary to better understand the host adaptability of the fungus, including identifying key determinants of infection to enable more precise disease control. Here, we report highly contiguous genome sequences (using long-read PacBio technology) of two isolates from rice paddies in Portugal, M22.7 and T22.2, which exhibit distinctly aggressive symptoms in rice. Both mitochondrial and nuclear sequences were characterised in this study. The resulting nuclear genomes have assembly lengths of 46.4 Mb for M22.7 (198x coverage) and 46.3 Mb for T22.2 (163x coverage), with near-complete BUSCO completeness (98.8%) and a 0% contamination score (EukCC). Phenotypic analyses on infected rice leaves show that both isolates are infectious and virulent in two different rice cultivars. Most notably, M22.7 lacks the avirulence effector genes Avr-Pii, Avr-Pia and Avr-Pik, which are present in T22.2. This announcement represents the first genome resource for natural isolates of P. oryzae from Portugal in over 30 years, filling an important data gap from a major European rice-producing country that produces locally adapted rice varieties under specific agro-environmental conditions (near the Atlantic coast).
ER -