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Peer-reviewedCC BY 4.0Scientific Reports

Development of a human respiratory tract effector cell-mediated antiviral assay using blood and airway immune cells from individuals previously hospitalised with COVID-19

Abstract

Serum antibody–based neutralisation assays correlate with protective immunity to SARS-CoV-2, but cell-mediated in vitro cytotoxicity assays are lacking. Data on virus-specific respiratory tract immune responses in humans remain limited. Fifteen healthy participants who had previously been hospitalised with severe COVID-19 pneumonia were recruited. Peripheral blood mononuclear cells (PBMCs), bronchoalveolar lavage (BAL), and nasal lavage (NL) cells were phenotyped by flow cytometry. Cells were stimulated with SARS-CoV-2 S1 receptor-binding domain and nucleocapsid antigens using 15-mer peptide pools or recombinant proteins. Compartment-specific effector cell-mediated cytotoxicity of SARS-CoV-2 Delta pseudovirus by antigen-stimulated effector cells was assessed using a luciferase assay. Cytokine expression was measured by Luminex. Distinct immune profiles were observed across compartments. Macrophages and dendritic cells predominated in BAL, B cells in NL, and T cells and natural killer cells in PBMCs. BAL cells expressed significantly higher IL-1β, while PBMCs showed higher TNF-α, IL-2 and IL-6 expression. Responses did not differ between peptide and protein antigens. Antigen-stimulated PBMC, BAL, and NL cells demonstrated significantly greater pseudovirus cytotoxicity than unstimulated controls ( p < 0.05). This proof-of-concept study establishes a functional human T-cell–mediated SARS-CoV-2 cytotoxic assay in blood and alveolar compartments, providing a platform to study antiviral mucosal immunity relevant to future pandemics.

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BibTeX
@article{tomasicchio2026development,
  title = {{Development of a human respiratory tract effector cell-mediated antiviral assay using blood and airway immune cells from individuals previously hospitalised with COVID-19}},
  author = {Michele Tomasicchio and Lynn Semple and Rolanda Londt and Aliasgar Esmail and Lance Lucas and Suzette Oelofse and Anil Pooran and Shameem Jaumdally and Penny Moore and Keertan Dheda},
  journal = {Scientific Reports},
  year = {2026},
  month = oct,
  doi = {10.1038/s41598-026-74636-8},
  url = {https://www.nature.com/articles/s41598-026-74636-8},
  note = {CC BY 4.0},
}
RIS
TY  - JOUR
TI  - Development of a human respiratory tract effector cell-mediated antiviral assay using blood and airway immune cells from individuals previously hospitalised with COVID-19
AU  - Michele Tomasicchio
AU  - Lynn Semple
AU  - Rolanda Londt
AU  - Aliasgar Esmail
AU  - Lance Lucas
AU  - Suzette Oelofse
AU  - Anil Pooran
AU  - Shameem Jaumdally
AU  - Penny Moore
AU  - Keertan Dheda
PY  - 2026
DA  - 2026/10/17
JO  - Scientific Reports
DO  - 10.1038/s41598-026-74636-8
UR  - https://www.nature.com/articles/s41598-026-74636-8
AB  - Serum antibody–based neutralisation assays correlate with protective immunity to SARS-CoV-2, but cell-mediated in vitro cytotoxicity assays are lacking. Data on virus-specific respiratory tract immune responses in humans remain limited. Fifteen healthy participants who had previously been hospitalised with severe COVID-19 pneumonia were recruited. Peripheral blood mononuclear cells (PBMCs), bronchoalveolar lavage (BAL), and nasal lavage (NL) cells were phenotyped by flow cytometry. Cells were stimulated with SARS-CoV-2 S1 receptor-binding domain and nucleocapsid antigens using 15-mer peptide pools or recombinant proteins. Compartment-specific effector cell-mediated cytotoxicity of SARS-CoV-2 Delta pseudovirus by antigen-stimulated effector cells was assessed using a luciferase assay. Cytokine expression was measured by Luminex. Distinct immune profiles were observed across compartments. Macrophages and dendritic cells predominated in BAL, B cells in NL, and T cells and natural killer cells in PBMCs. BAL cells expressed significantly higher IL-1β, while PBMCs showed higher TNF-α, IL-2 and IL-6 expression. Responses did not differ between peptide and protein antigens. Antigen-stimulated PBMC, BAL, and NL cells demonstrated significantly greater pseudovirus cytotoxicity than unstimulated controls ( p < 0.05). This proof-of-concept study establishes a functional human T-cell–mediated SARS-CoV-2 cytotoxic assay in blood and alveolar compartments, providing a platform to study antiviral mucosal immunity relevant to future pandemics.
SN  - 2045-2322
ER  -