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PreprintCC BY 4.0arXiv

Selectivity in tip-induced skeletal editing via heteroatom substitution

Abstract

Skeletal editing enables precise structural modifications of molecules at late stages of a synthetic sequence, with applications in drug discovery and materials science. We recently demonstrated skeletal editing on the single-molecule scale. Voltage pulses applied by the tip of a scanning probe microscope to an oxygen-containing seven-membered heterocycle led to both oxygen deletion and ring-contraction rearrangement reactions. An open question is whether selective skeletal editing of a heterocyclic core can be achieved by an appropriate choice of the heteroatom. Here, we show that tip-induced reactions of an analogous sulfur-containing seven-membered ring results in sulfur deletion in virtually all cases. Our results demonstrate that the combination of tip-induced chemistry and heteroatom selection in the molecular design is a powerful strategy for single-molecule skeletal editing, with the potential to enable diverse structural transformations of heterocyclic frameworks.

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BibTeX
@misc{mishra2026selectivity,
  title = {{Selectivity in tip-induced skeletal editing via heteroatom substitution}},
  author = {Shantanu Mishra and Rasmus Svensson and Valentina Malave and Florian Albrecht and Manuel Vilas-Varela and Henrik Grönbeck and Leo Gross and Diego Peña},
  howpublished = {arXiv},
  year = {2026},
  month = jun,
  doi = {10.48550/arxiv.2606.22677},
  eprint = {2606.22677},
  archivePrefix = {arXiv},
  url = {https://arxiv.org/abs/2606.22677},
  note = {CC BY 4.0},
}
RIS
TY  - UNPB
TI  - Selectivity in tip-induced skeletal editing via heteroatom substitution
AU  - Shantanu Mishra
AU  - Rasmus Svensson
AU  - Valentina Malave
AU  - Florian Albrecht
AU  - Manuel Vilas-Varela
AU  - Henrik Grönbeck
AU  - Leo Gross
AU  - Diego Peña
PY  - 2026
DA  - 2026/06/21
PB  - arXiv
DO  - 10.48550/arxiv.2606.22677
UR  - https://arxiv.org/abs/2606.22677
AB  - Skeletal editing enables precise structural modifications of molecules at late stages of a synthetic sequence, with applications in drug discovery and materials science. We recently demonstrated skeletal editing on the single-molecule scale. Voltage pulses applied by the tip of a scanning probe microscope to an oxygen-containing seven-membered heterocycle led to both oxygen deletion and ring-contraction rearrangement reactions. An open question is whether selective skeletal editing of a heterocyclic core can be achieved by an appropriate choice of the heteroatom. Here, we show that tip-induced reactions of an analogous sulfur-containing seven-membered ring results in sulfur deletion in virtually all cases. Our results demonstrate that the combination of tip-induced chemistry and heteroatom selection in the molecular design is a powerful strategy for single-molecule skeletal editing, with the potential to enable diverse structural transformations of heterocyclic frameworks.
ER  -