Skip to content
DraconiticResearch
Search Sources API
203,234 studies31 sourcesUpdated 57 min ago
PreprintCC BYbioRxiv

Tree-to-cycle transition scale characterizes trade-off between dissipation and construction cost in adaptive transport networks

  1. 1Inria Lyon

Abstract

Biological transport networks range from tree-like to highly reticulated architectures, which have been proposed to reflect different balances between viscous dissipation and metabolic cost. This balance cannot currently be inferred from structure: available descriptors either discard edge width entirely or preserve it only as a hierarchical decomposition that has not been mapped to the dissipation--cost trade-off. Here we introduce the tree-to-cycle transition scale, a single number given by the radius of the thickest edge outside the maximum spanning tree, which we interpret as the highest cost a network accepts for redundancy. We compute it for networks adapting to spatially correlated load fluctuations, whose correlation length sets their position on the Pareto front. The transition scale decreases linearly with dissipation and increases linearly with metabolic cost. Its scatter is largest in the regime where some networks end up off the front, and adding a growth term removes the scatter but splits the correlation into two branches. A single quantity read off the static network architecture thus characterizes where a network sits on the Pareto front, and is sensitive to the trajectory the network took through the optimization landscape. This suggests a route to comparing observed networks, for example leaf venations across species or growth conditions, by the trade-off they realize.

Related

  1. Advances in mechanical force-induced adaptive responses and pathological transition of renal tubular epithelial cells
    Shilin Li, Yuefeng Cai, Yi Zeng +2
    Frontiers in cell and developmental biologyPeer-reviewedCC BYFull textGeneral biochemistryEurope PMC
  2. CRISPR-Enabled Transition to Adsorption-Coupled Redox Transport: Toward the Use of Conventional Voltammetry in Electrochemical Biosensors
    Pouya Soltan Khamsi, Aida Ebrahimi
    ChemRxivPreprintCC BYMolecular biology & gene regulationChemRxiv
  3. Sphingolipid metabolic subtyping defines SPHK1 as an oncogene and characterizes immunosuppressive TME features in gastric cancer.
    Zeyu Wang, Zhuying Yue, Chengkai Jiang
    Cancer cell internationalPeer-reviewedCC BYFull textMolecular biology & gene regulationEurope PMCDOAJ
  4. Machine-learning-assisted integration of single-cell and bulk transcriptomics characterizes glioblastoma ecosystem states and immune-associated programs
    Jun Cao, Hao Cheng, Yu Wang +3
    Frontiers in cell and developmental biologyPeer-reviewedCC BYFull textMolecular biology & gene regulationEurope PMCEurope PMCPMC
  5. Artificial intelligence-based diagnostic model construction and quantitative analysis of retinal vein occlusion lesions using color fundus photographs
    Wenjuan Wu, Li Sun, Xingye Wang +9
    Frontiers in cell and developmental biologyPeer-reviewedCC BYFull textGeneral biochemistryEurope PMC
BibTeX
@misc{stark2026treetocycle,
  title = {{Tree-to-cycle transition scale characterizes trade-off between dissipation and construction cost in adaptive transport networks}},
  author = {J. Stark and C. Godin},
  howpublished = {bioRxiv},
  year = {2026},
  month = sep,
  doi = {10.64898/2026.09.02.748799},
  url = {https://www.biorxiv.org/content/10.64898/2026.09.02.748799v1},
  note = {CC BY},
}
RIS
TY  - UNPB
TI  - Tree-to-cycle transition scale characterizes trade-off between dissipation and construction cost in adaptive transport networks
AU  - J. Stark
AU  - C. Godin
PY  - 2026
DA  - 2026/09/02
PB  - bioRxiv
DO  - 10.64898/2026.09.02.748799
UR  - https://www.biorxiv.org/content/10.64898/2026.09.02.748799v1
AB  - Biological transport networks range from tree-like to highly reticulated architectures, which have been proposed to reflect different balances between viscous dissipation and metabolic cost. This balance cannot currently be inferred from structure: available descriptors either discard edge width entirely or preserve it only as a hierarchical decomposition that has not been mapped to the dissipation--cost trade-off. Here we introduce the tree-to-cycle transition scale, a single number given by the radius of the thickest edge outside the maximum spanning tree, which we interpret as the highest cost a network accepts for redundancy. We compute it for networks adapting to spatially correlated load fluctuations, whose correlation length sets their position on the Pareto front. The transition scale decreases linearly with dissipation and increases linearly with metabolic cost. Its scatter is largest in the regime where some networks end up off the front, and adding a growth term removes the scatter but splits the correlation into two branches. A single quantity read off the static network architecture thus characterizes where a network sits on the Pareto front, and is sensitive to the trajectory the network took through the optimization landscape. This suggests a route to comparing observed networks, for example leaf venations across species or growth conditions, by the trade-off they realize.
ER  -