Skip to content
DraconiticResearch
Search Sources API
197,768 studies31 sourcesUpdated 33 min ago
PreprintCC BYbioRxiv

Photoactivatable Rac1: a photosensor tilt by time-resolved crystallography and a partially open switch I when GDP-bound

7 more authors
  1. 1Dioscuri Centre for Structural Dynamics of Receptors, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University

Abstract

The LOV2 domain of Avena sativa phototropin 1 is widely used to control proteins with light, but how its signal reaches a fused effector has not been visualized. We followed photoactivatable Rac1 by time-resolved serial crystallography at room temperature. Within 350 {micro}s, a fifth of the photosensors form the flavin-cysteine adduct and tilt as a rigid body on Rac1 about an axis through the domain interface, while the J helix stays docked and Rac1 keeps GTP and dark-state switches up to 1.85 ms. Dark crystals contain a variable GDP-bound sub-population, so light data must be referenced to interleaved dark frames. In this sub-population, switch I is only partially open, held at a Ca2+ ion that bridges LOV2 and Rac1, a conformation that can persist in simulations without the lattice. The photosensor thus first acts on Rac1 at the interface that also holds switch I in the GDP-bound state.

Related

  1. Sample-efficient time-resolved X-ray crystallography with serial small wedges
    S. Bukhdruker, R. Astashkin, D. Bratanov +11
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  2. Symmetry Breaking under Vectorial Perturbations in Macromolecular X-ray Crystallography
    H. K. Wang, J. B. Greisman, K. M. Dalton +3
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  3. Correcting Multiple Scattering Enables Dynamical Electron Crystallography in Standard Workflows
    D. R. Hopkins, T. Low-Beer, Z. Ding +7
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  4. Antibody CDR-H3 loop flexibility: Insights from X-ray crystallography, structural bioinformatics, and the limits of current deep learning methods
    Amélie Barozet, Magali Mathieu, David Papin +7
    Journal of Structural BiologyPeer-reviewedCC BY 4.0Full textStructural biologyGeneral biologyHAL
  5. Are carbohydrate ring distortions determined by biology or crystallography? The impact of experimental conditions on structural data
    D. S. Lima, V. A. Cabral, H. Verli
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
BibTeX
@misc{pachota2026photoactivatable,
  title = {{Photoactivatable Rac1: a photosensor tilt by time-resolved crystallography and a partially open switch I when GDP-bound}},
  author = {M. Pachota and M. K. Shankar and M. Wisniewska and A. Koczurowska and C. M. Casadei and A. Solecka and S. M. Kapetanaki and B. Olasz and L. Lopes Cavalcante and R. Ke and D. Lang and M. Bjelcic and A. Asghar and M. Milas and T. Ursby and M. Chenchiliyan and J. Nan and E. Rosta and P. Nogly},
  howpublished = {bioRxiv},
  year = {2026},
  month = oct,
  doi = {10.64898/2026.10.27.762334},
  url = {https://www.biorxiv.org/content/10.64898/2026.10.27.762334v1},
  note = {CC BY},
}
RIS
TY  - UNPB
TI  - Photoactivatable Rac1: a photosensor tilt by time-resolved crystallography and a partially open switch I when GDP-bound
AU  - M. Pachota
AU  - M. K. Shankar
AU  - M. Wisniewska
AU  - A. Koczurowska
AU  - C. M. Casadei
AU  - A. Solecka
AU  - S. M. Kapetanaki
AU  - B. Olasz
AU  - L. Lopes Cavalcante
AU  - R. Ke
AU  - D. Lang
AU  - M. Bjelcic
AU  - A. Asghar
AU  - M. Milas
AU  - T. Ursby
AU  - M. Chenchiliyan
AU  - J. Nan
AU  - E. Rosta
AU  - P. Nogly
PY  - 2026
DA  - 2026/10/27
PB  - bioRxiv
DO  - 10.64898/2026.10.27.762334
UR  - https://www.biorxiv.org/content/10.64898/2026.10.27.762334v1
AB  - The LOV2 domain of Avena sativa phototropin 1 is widely used to control proteins with light, but how its signal reaches a fused effector has not been visualized. We followed photoactivatable Rac1 by time-resolved serial crystallography at room temperature. Within 350 {micro}s, a fifth of the photosensors form the flavin-cysteine adduct and tilt as a rigid body on Rac1 about an axis through the domain interface, while the J helix stays docked and Rac1 keeps GTP and dark-state switches up to 1.85 ms. Dark crystals contain a variable GDP-bound sub-population, so light data must be referenced to interleaved dark frames. In this sub-population, switch I is only partially open, held at a Ca2+ ion that bridges LOV2 and Rac1, a conformation that can persist in simulations without the lattice. The photosensor thus first acts on Rac1 at the interface that also holds switch I in the GDP-bound state.
ER  -