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Biophysics

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1,034 studies

  1. Viscous mechanical cues encode metastatic behavior through cytoskeletal-nuclear coupling and chromatin remodeling
    Khanh Loan Ly, Woong Young So, Thomas Brew +12
    bioRxivPreprintCC0Full textBiophysicsbioRxivPMC
  2. Free-Energy and Molecular Dynamics Analysis of Ser195 and Thr195 Rotameric States in Thrombin
    S. Sauve, P. Chaturvedi, M. Moradi
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  3. Quantitative fluorescence lifetime imaging of protein microenvironments by genetically encoded compact benzodiazole probes
    H. Qianzhu, S. M. Butler, E. Habel +8
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  4. Decoding CBM2 binding modes: how similar folds achieve distinct substrate preferences
    S. Hansen Trooyen, A. P. Rennison, T. Dahlgren +3
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  5. Freshwater Blackworms Solving a Maze
    A. Adamatzky
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  6. Dual role of the RIG-I 2CARD as a signaling module and a brake on dsRNA translocation
    S. Kondo, J. Zhang, K. Matsushima +6
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  7. DiffuChannel: A Conditional Denoising Diffusion Model that Synthesises Single-Molecule Patch-Clamp Data with Exactly Known Idealisation (Ground Truth)
    S. T. M. Ball, R. Barrett-Jolley
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  8. A chemical perturbation scan on a K2P channel modulator pocket identifies affinity hotspots
    E. Mendez-Otalvaro, B. de Groot
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  9. Persistent functionalized triarylmethyl radicals: when spin meets chirality.
    Imma Ratera, Jaume Veciana, Paula Mayorga-Burrezo
    Chemical sciencePeer-reviewedCC BY-NCFull textBiophysicsEurope PMC
  10. Topology-aware few-shot segmentation improves rice leaf-cell boundary and count fidelity, while correction is risky under tested domain shifts
    Gaixing Wei, Da Zeng, Shenglin Qin +1
    Frontiers in Plant SciencePeer-reviewedCC BY 4.0Full textBiophysicsCrossrefPMC
  11. Reviewing reproducibility and replicability in 'Deconstructing gastrulation at single-cell resolution' by Stern et al. (2022).
    Gabriel G Martins, Haydee O Hernández, Lachlan Whitehead +1
    Journal of microscopyPeer-reviewedCC BY-NCFull text1 citedBiophysicsEurope PMC
  12. Distinct extracellular architectures shape mechanical persistence in GPVI and CLEC-2 receptor assemblies
    Yao Zhang, Yue Cheng, Han Ni Soe +1
    PLOS Computational BiologyPeer-reviewedCC BYFull textBiophysicsPLOSEurope PMC
  13. An Affordable Shifted-Excitation Raman Difference Spectroscopy (SERDS) Setup: Construction, Noise Analysis, and Detection Limits
    Peisen Qian, Brandon Rasmussen, Joaquín Rodríguez-López +1
    ChemRxivPreprintCC BYFull textBiophysicsChemRxiv
  14. Calibrating AlphaFold confidence scores for interface quality
    Sagyndyk Sagadinov, Vsevolod Viliuga, Arne Elofsson
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  15. Distinct activation mechanisms underlie ligand efficacy at a GPCR
    M. K. Howard, E. J. Fine, K. Srinivasan +16
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  16. Enhanced DNA Scanning and Target Specificity via Motif Sequestration
    J. S. Montgomery, E. Akbari, A. L. Hansen +3
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  17. The Signaling Pathway of a Bacterial Two-Component System Determined by cryo-EM
    P. Karki, C. Hernandez, J. H. Mendez +9
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  18. Understanding the role of chromatin accessibility and compaction on loop extrusion dynamics
    N. Pellet, C. L. Pastrana, A. Delamarre +3
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  19. Interlaboratory benchmarking of differential scanning fluorimetry reveals sources of variability in protein thermal stability parameters
    S. Brule, M. Chevreuil, O. Burastero +40
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  20. Branching Suppresses Self-Aggregation while Preserving Membrane Association in SET-M33: An Atomistic Molecular Dynamics Study
    S. Satvati, M. Rigoli, S. Fortuna +3
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  21. Prospective discovery of LasB inhibitors by integrating generative design, free energy ranking, and experimental validation
    A. Martinez Leon, A. Vgenopoulou, G. Jezequel +3
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  22. GENIE: a multi-agent system for closed-loop autonomous microscopy
    W. E. Nieves Vasquez, J. Lin, J. Azukas +4
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  23. A learning-to-rank framework for large-scale identification of unknown proteins from cryo-EM and cryo-ET maps
    Qi Hu, Georges Mer
    bioRxivPreprintCC BYFull textBiophysicsbioRxivPMC
  24. Structural heterogeneity of uncrosslinked FtsH-HflKC assemblies includes variable FtsH occupancy and a distinct wild-type FtsH architecture
    G. Goc, D. Ugurlar, I. Berger +2
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  25. Structural basis for phosphorylation-induced inactivation of the rice ammonium transporter AMT1;1
    F. Yu, X. Huang, S. Wang +4
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv