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Biophysics

1,034 studies56 in 7 days372 in 30 days

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1,034 studies

  1. MD-LLM-2: A Transferable Language Model of Molecular Dynamics with Physical Conditioning and Explicit Path Probabilities
    Mhd Hussein Murtada, Z. Faidon Brotzakis, Michele Vendruscolo
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  2. De novo design of monoclonal and bispecific antibodies with OFAntibody
    Valhalla Team
    arXivPreprintCC BY-NC-SA 4.0Full textBiophysicsarXiv
  3. Chemokine-induced cell swelling fluidises the plasma membrane to regulate CD8+ T cell migration
    L. L. de Boer, C. O. Gurdap, E. Sezgin
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  4. Fusion Peptide Insertion Configuration Determines the Mechanism of Membrane Curvature Induction in Human Parainfluenza Virus Type 3
    M. A. Brunet, L. J. S. Lopes, N. Mansfield +7
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  5. Structural thermodynamics by cryo-EM resolves minute energy differences in heterogeneous protein complexes.
    L. Boyens-Thiele, M. Bicanin, K. Engholm-Keller +5
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  6. Direct visualization of lysosome-mediated intracellular transport and membrane anchoring of TNF-α in human T cells
    A. Burgess, H. Gunasekara, J. Xie +1
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  7. CryoFAST: A Fab-Aided Cryo-EM Workflow for High-Resolution Structure Determination of Sub-50-kDa Protein Targets
    X. Li, S. Deng, W. Li +5
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  8. Physical Basis Of pKa Shift For Ionizable Lipids In An LNP-like Environment
    A. Sharma, S. Sur, A. Grossfield
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  9. A transient third metal ion shapes the catalytic cycle of a group I intron ribozyme
    E. McCarthy, S. Ekesan, T. J. Giese +5
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  10. Structural Insights into the Expanded Substrate Scope of a Cysteine-Dependent Hydrolase from Rhodococcus opacus for Polyethylene, Polypropylene, and Polystyrene Biodegradation
    S. Aggarwal, S. Singh, A. Kayastha +6
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  11. STRUCTURAL AND MOLECULAR DYNAMICS ANALYSIS OF HUMAN β-DEFENSIN 1 VARIANTS REVEALS DISTINCT PERTURBATION SIGNATURES
    R. J. Fogarty, R. Urrutia, F. Pinto e Vairo +2
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  12. Potassium modulates Phytophthora zoospore motility and flagellar beating through dose-dependent effects
    C. A. Lupatelli, A. ATTARD, E. Galiana +3
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  13. Amide I kurtosis maps cardiac amyloid in human tissue by ultrabroadband multiplex coherent anti-Stokes Raman scattering (CARS) microscopy
    K. Ota, T.-H. Chen, T. Yamaguchi +7
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  14. Efficient detection of cryptic pockets on challenging drug targets using MD-free co-vibrational modes
    T. V. Szalai, D. Bajusz, Z. Orgovan +7
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  15. BVLab-analyzer: a unified visual toolbox for terabyte-scale whole-brain cell detection, neuron reconstruction, and vascular network extraction.
    Ying Hu, Xiaojun Wang, Pei Sun +2
    Frontiers in neuroinformaticsPeer-reviewedCC BYFull textBiophysicsEurope PMC
  16. Dorsal horn mapping: a Fiji toolbox for standardized laminar registration and transparent reporting of spinal cord imaging data from adult C57Bl/6 mice.
    L Roettger, P Adamek, S G Lechner
    Frontiers in pain research (Lausanne, Switzerland)Peer-reviewedCC BYFull textBiophysicsEurope PMC
  17. Protocol for quantifying chromatin DNA replication by multiplex labeling and single-molecule localization microscopy.
    Zhiguang Xiao, Xiaodong Guan, Yujie Sun +2
    STAR protocolsPeer-reviewedCC BYFull textBiophysicsEurope PMC
  18. SCKAnalyzer: A Web Tool for Single-Cycle Kinetics Analysis and Simulation
    Florian Malard, Jean-Michel Blanc, Eric Roubin +2
    HALPreprintCC BY 4.0Full textBiophysicsHALbioRxiv
  19. Adaptive motility and feeding strategies of deep-branching predatory protists
    Julien Bouvard, Angéline Girard, Samuel A Bentley +2
    HALPreprintCC BY 4.0Full textBiophysicsHALbioRxiv
  20. Gating shift to an ohmic mode of TREK-1 channel induced by docosahexaenoic acid
    Emilie Bechard, Jean-Yves Le Guennec, Marie Demion
    Biophysical JournalPeer-reviewedCC BY 4.0Full textBiophysicsHAL
  21. Effects of 1.5 GHz electromagnetic exposure on large unilamellar vesicle (LUV) model membranes
    Flavia Del Vecchio, Nicolas Jolly, Suzanne De Araujo +6
    Scientific ReportsPeer-reviewedCC BY 4.0Full textBiophysicsCrossref
  22. Electron Paramagnetic Resonance on a Tip Reveals Thickness-Dependent Spin Heterogeneity in Two-
    Gianluca Fabi, Ramon Torres, Maxwell Sparey +5
    ChemRxivPreprintCC BYFull textBiophysicsChemRxiv
  23. MyoPath: A deep learning pipeline for objective morphometric assessment of skeletal muscle biopsies.
    Huahua Zhong, Mingshi Gao, Shang Ma +12
    Journal of pathology informaticsPeer-reviewedCC BYFull textBiophysicsEurope PMC
  24. Rapid identification of porcine bacterial pathogens using an artificial intelligence Raman microbial analyzer for biology
    Chia-Hung Lu, Ni-Jyun Ke, Chi-Chun Liu +10
    Microbiology SpectrumPeer-reviewedCC BY 4.0Full textBiophysicsPMC
  25. A Shortcut to Structure in AlphaFold 3
    Jonathan Feldman, Jeffrey Skolnick
    arXivPreprintCC BY-NC-ND 4.0Full textBiophysicsarXiv