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Biophysics

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1,034 studies

  1. SpheroQuaNNt: U-Net–based volume estimation in tumor spheroid and organoid models for assessing preclinical treatment response
    Nathalia Leal Dovaizem, Jean Carlos dos Santos da Luz, Alexis Germán Murillo Carrasco +1
    CytotechnologyPeer-reviewedCC BY 4.0Full textBiophysicsPMCEurope PMC
  2. Participant-level Raman spectroscopy of circulating EV-enriched fractions reveals distributed spectral differences in ischemic stroke patients
    Emanuele Nardone, Nikita Belko, Tuomas Kilpeläinen +11
    ChemRxivPreprintCC BYFull textBiophysicsChemRxiv
  3. Preparation of mouse tumor slices for ex vivo two-photon microscopy
    Tina Kwok, Jessica N. Lancaster
    STAR ProtocolsPeer-reviewedCC BY-NC-ND 4.0Full textBiophysicsPMC
  4. MechGate: combining mechanism-derived measures of permeation and efflux to screen small molecule drugs targeting Escherichia coli
    Lang Qin, Jagath C Rajapakse
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  5. Phase Separation of Intracellular Proteins Influences Synaptic Bistability
    V. Saxena, A. A. Totade, V. Pandey +1
    bioRxivPreprintCC BY-NCFull textBiophysicsbioRxiv
  6. Cancers relax selection on charge at the mitochondrial complex I quinone cavity
    J.-Y. Sung, J.-H. Cheong
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  7. Rugnux: from diffraction images to structure at synchrotrons and XFELs in one program
    F. Leonarski, M. Wang
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  8. Correcting Multiple Scattering Enables Dynamical Electron Crystallography in Standard Workflows
    D. R. Hopkins, T. Low-Beer, Z. Ding +7
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  9. Protein cofactors diversify PRC2 architecture and function
    Trinity Cookis, Ana-Florina Galic, Kevin Li +5
    bioRxivPreprintCC BYFull textBiophysicsbioRxivPMC
  10. Replacing H2O with D2O in cryo-EM reduces radiation damage in biological samples
    M. Chevalier Kwon, S. Matinyan, E. van Genderen +1
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  11. Single molecule nanopore sensing across a liquid-solid interface
    C. C. C. Chau, D. Charnock, D. Kpeglo +18
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  12. Agent-guided epitope excision enables economical de novo binder design
    Jun W. Kim, Artiom Myaskovsky, Oscar Donosa +5
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  13. Computational De Novo Design of Miniprotein Candidate Neutralizers Targeting the IL-23 Cytokine Subunit p19
    Raghav Paladugu, Fardina Fathmiul Alam
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  14. What Transfers Across Protein Pockets? Experience Reuse in Molecular Optimization for Agentic Structure-Based Drug Design
    Zaifei Yang, Weiyu Chen, Yaqing Wang +1
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  15. Probe Before You Edit: Probing-Guided Molecular Optimization for LLM Agents in Structure-Based Drug Design
    Zaifei Yang, Weiyu Chen, Yaqing Wang +1
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  16. Metabolic-State-Dependent Magnetic Field Effects on Endogenous Flavin Autofluorescence in Escherichia coli
    N. Ikeya, M. Omi, J. R. Woodward
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  17. Choosing a lipid force field for membrane remodeling: pore formation and membrane mimetics in CHARMM36, AMBER Lipid21 and Slipids
    E. Poppleton, F. Gräter, J. S. Hub +2
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  18. Decoding the Physical Mechanisms of Protein-Small Molecule Association by Multiscale Kinetic Monte-Carlo Simulations
    Z. Su, Y. Wu
    bioRxivPreprintCC BYFull textBiophysicsbioRxiv
  19. Rapid femtosecond laser trenching accelerates cryo-electron tomography lamella workflows
    C. M. Orr, P. N. M. Shah, E. C. Bragginton +5
    bioRxivPreprintCC BY-NC-NDFull textBiophysicsbioRxiv
  20. When do bacterial mechanosensitive channels get activated?
    S. S. S B, O. Albarran, R. Garces +3
    bioRxivPreprintAll rights reservedFull textBiophysicsbioRxiv
  21. Fluorescence-Based Microviscosity Mapping in Membraneless Organelles
    Avantika Kapoor, Pascal Didier, Carla Faivre +8
    Chemical & Biomedical ImagingPeer-reviewedCC BY-NC-ND 4.0Full textBiophysicsHAL
  22. GAMPoint: Geometry-augmented vision transformer with a multimodal-ready interface for 3D point-cloud segmentation
    Xinyu Mu, Xuan He, Ziqi Huang +1
    PLOS OnePeer-reviewedCC BYFull textBiophysicsPLOSEurope PMC
  23. Low-affinity exchangeable probes for super-resolution and long-term fluorescence imaging.
    Andrey S Klymchenko, Remi Pelletier, Pascal Didier
    Chemical sciencePeer-reviewedCC BYFull textBiophysicsEurope PMCPMC
  24. RiboBridge: protein-conditioned de novo RNA binder structure design
    Zhou Zhang, Hanqun Cao, Minghao Sun +5
    arXivPreprintCC BY 4.0Full textBiophysicsarXiv
  25. Supercoiling Drives DNA-Protein Co-Condensation
    Sihan Liu, Hongbo Zhao, Andrej Košmrlj
    arXivPreprintarXiv licenceFull textBiophysicsarXiv