Bioinformatics & computational biology
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- Improving real-time search through deep learning-enhanced fragment ion indexing
- Peripheral Exercise Transcriptomes Do Not Converge on Glutamatergic or Neuroinflammatory Signatures: A Cross-Platform Meta-Analysis
- ToxINsight: An Integrated Web Platform for Sequence, Structure, and Ligand Binding Analysis of Snake Venom Toxins
- Local fractal dimension as an indicator of functional reorganization in molecular interaction networks
- Predicted condensation-related signatures localize to two C-terminal regions of the prion protein across cervid PRNP variants associated with chronic wasting disease
- TSNR: Protein-Specific Signals with Broad Molecular Context for Spatial Protein Prediction
- Batch Effect Correction to Enhance Utility of a Publicly Available ALS Proteomics Dataset
- Computational Repurposing of FDA Approved Drugs Against Cyclin Dependent Kinase (CDK2)
- RNA assignment and segmentation geometry in Visium HD profiles of fibrostenotic Crohn's disease
- Interpreting graph neural networks reveals microbial association patterns in inflammatory bowel diseases
- The Quagmire of Immunogenicity-Guided Antibody Design: Labels Limit Progress
- FateDriver: Weakly supervised dual-view graph learning for transition-specific prioritization of candidate regulators in cellular reprogramming
- Cross-modal transfer enables zero-shot prediction of drug responses across cell types
- tWhEEL: a transcript-aware workflow for quantifying CRISPR knockout feasibility using transcriptome assembly
- Reading Between the Reads: A Decade On, Revisiting Sequencing Protocol Annotation in the Sequence Read Archive
- A Differentiable, GPU-Accelerated Finite-Element Formulation in JAX for Large-Deformation Shells with Contact: Application to Patient-Specific Aortic Valve Simulation
- HGPRGDel: GPR-Aware Learning and Ranking for Growth-Coupled Gene Deletion Design
- Dynamic heart rate variability for classification of arrhythmia burden
- Multiscale MIGHT: Modeling Local and Systemic Particle Transport in the Cardiovascular System
- AI-guided deep visual proteomics reveals recurrence-associated morpho-molecular signatures within triple-negative breast cancers
- A general-purpose multi-path stacked coupling for stochastic reaction networks
- Stationary Action Principles for Neuronal Growth
- Video-rate quantitative phase and polarimetric imaging (QP2I) for label-free imaging of contracting muscle cells
- mito-overview: a mitochondrial report software
- Ground-truth evaluation of sparse autoencoder features on spatial, single-cell and language-model embeddings