Bioinformatics & computational biology
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- Single-cell foundation models transfer across deep evolutionary distances
- EMBER: Contextualized gene representations enable compositional prediction across cellular perturbations
- DUET: sequence-only prediction of RNA-small molecule binding sites
- GaussF: An Unbiased Gaussian Framework for High-Precision Transcript Quantification with a Programmable Self-Benchmark Model
- Network analysis reveals converging molecular mechanisms in genetic epilepsies
- Open-Source Framework for the Visualization, Quantification, and Analysis of 4D Flow and High-Dimensional Magnetic Resonance Images
- What to randomize matters: a controlled study of volume, axis and representation in low-data molecular generation
- Who Called? V33DA: A Physically Verified Multimodal Benchmark for Vocal Attribution in Zebra Finch Groups
- pyTransRate: reference-free quality assessment of de novo transcriptome assemblies with current aligners and quantifiers
- Kinetic Proofreading Activation Times Beyond the Weibull Limit
- Diagnosing parameter unidentifiability in stochastic dynamics with an application to flocking models
- The Mean First-Reaction Time on a Thin Filament in a 3-D Domain
- Agentic Discovery Transfer Enables Cross-Cancer Discovery at Scale
- Efficient biological design via genomic in-context learning
- Joint localization and testing reveals spatial context of differential expression
- Scooby-2: fine-tuning AlphaGenome for single-cell genomic track prediction
- Out-of-balance growth enables cost-free synthesis of the flagellum and other proteins in a single bacterium
- Modeling reaction–diffusion processes in simplified to complex astroglial branchlet geometries using different simulation tools
- IV-PAFNet: Infrared-visible cross-modal alignment and fusion network for nighttime UAV object detection
- Fast probabilistic whitening transformation for ultra-high dimensional genetic data
- ANN-based prediction of torsional fatigue behavior in an injection-molded compliant mechanism component
- A multi-stage framework for emotionally intelligent dialogue systems using topological sentiment encoding and causal policy optimization
- Elucidating the toxicogenomic mechanisms of DBP exposure on Hepatocellular carcinoma through network toxicology and molecular docking analysis
- A systematic pan-cancer analysis of intratumoral microbiota-derived epitopes to inform cancer immunotherapy and prevention
- The structural history of Eukarya